Report for Sequence Feature Glyma20g22660
Feature Type: gene_model
Chromosome: Gm20
Start: 32594171
stop: 32597667
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g22660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G09380 AT
Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374
SoyBase E_val: 4.00E-144 ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00892 PFAM
EamA-like transporter family
JGI ISS
UniRef100_G7I8G0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7I8G0_MEDTR
SoyBase E_val: 1.00E-150 ISS
UniRef100_I1NEW3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NEW3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g22660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g22660
Paralog Evidence Comments
Glyma10g28581 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g22660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g094100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g22660
Coding sequences of Glyma20g22660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g22660.1 sequence type=CDS gene model=Glyma20g22660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAGTAGTATTATTCCACTCTTGGCCATGATTATTGTACAATTGGGCTATGCAGGGATGAATATTACCTCAAAGCTTGCAATACAATCTGGCATGCAACCTCTTGTACTTGTTGCTTATCGCCAAATTTTTGCAACTATTTCCCTTGCTCCCTTCGCTTTTTGGTTTGAACGGAATACGGCTCCCCGAATGACAAAGCACATTGCGCTCCAGATATTACTATCTTCCTTAACAGGAGTAACAGGAAATCAGATTCTATACTTTTTGGGGCTTAAATATTCAACCGCTACAATTGCATGTGCACTAAACAACTTGCTCCCAGCATTCACTTTTGTTCTTGCAGTCCTCTCTAGACAAGAGAATTTGAGAATCAAGACTAGGGCAGGGGTAGCGAAGGCCTTAGGAACAGTCCTTAGTGTGGGTGGAGCGGTGCTTTTATCATTTTACCATGGAGAAGTCCTTGGTCTAGGTGAGTCAGAGATTCACTGGAGATATGCAGAAAAAATGCAAAGAGAATCCTCTTCTTCTGGTGGTGGAACAAACTTGATTCTAGGCCCTGTTGCTGTAATTGTTAGTGCTCTTCTTTGGGCAGTATGGTTCATAGTTCAAGCAAACATGAGCAAGAGCTATCCAGCTCCTTACACTAGCACTTTCTACATGTGTTTGATGGCAAGCATTCAGTGTGTGGCCATTGCCTTGTCTGCTGAACACAATGTCTCAGCTTGGTCACTCCACAGTACTATAAGACTCACCTCTGCACTTTATGCGGGGACTATTTCTACTGGGCTAGCGTATGTGCTAATGTCATGGACCATAGAGAGGAAAGGTCCCCTTTATGTGTCTGTGTTCTCCCCTTTGCTGCTTGTCATCATTGCTGTTGCTAGCTGGGCTTTGCTTCACGAGCAATTATACGTTGGAACTGCCATTGGGTCTCTGCTGATAGTGTTGGGGCTATATTTTGTTTTGTGGGGAAAGAACAAAGAGATGAATAAGATAGACATGGTTGAAGTTGAAGGCACAGTCATGGAGGCAATAAAGGAAAGCGAGAAGGATGAGGTGAAAGACCTGGAATTGCAACCCTATGATCCTTCCAACGGTAATGGTAACCATCATGATGCTAATTAA
Predicted protein sequences of Glyma20g22660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g22660.1 sequence type=predicted peptide gene model=Glyma20g22660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSIIPLLAMIIVQLGYAGMNITSKLAIQSGMQPLVLVAYRQIFATISLAPFAFWFERNTAPRMTKHIALQILLSSLTGVTGNQILYFLGLKYSTATIACALNNLLPAFTFVLAVLSRQENLRIKTRAGVAKALGTVLSVGGAVLLSFYHGEVLGLGESEIHWRYAEKMQRESSSSGGGTNLILGPVAVIVSALLWAVWFIVQANMSKSYPAPYTSTFYMCLMASIQCVAIALSAEHNVSAWSLHSTIRLTSALYAGTISTGLAYVLMSWTIERKGPLYVSVFSPLLLVIIAVASWALLHEQLYVGTAIGSLLIVLGLYFVLWGKNKEMNKIDMVEVEGTVMEAIKESEKDEVKDLELQPYDPSNGNGNHHDAN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
