Glyma20g22611 - SoyBase

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Report for Sequence Feature Glyma20g22611

Feature Type:	gene_model
Chromosome:	Gm20
Start:	32551616
stop:	32552480
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g22611

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26749	AT	Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein \| chr5:9398285-9399239 REVERSE LENGTH=147	SoyBase	E_val: 2.00E-19	ISS
PF00642	PFAM	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	JGI		ISS
UniRef100_Q0JP11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein 3 n=3 Tax=Oryza sativa RepID=C3H3_ORYSJ	SoyBase	E_val: 4.00E-22	ISS
UniRef100_UPI000233EECA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EECA related cluster n=1 Tax=unknown RepID=UPI000233EECA	SoyBase	E_val: 1.00E-112	ISS

Expression Patterns of Glyma20g22611

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g22611 not represented in the dataset	Glyma20g22611 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g22611

Paralog	Evidence	Comments
Glyma10g28540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g22611 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g093700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g22611

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g22611

Limit To All Plant Sequences

>Glyma20g22611.1   sequence type=CDS   gene model=Glyma20g22611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGAAGAAGTGTTATTGCGAGAAGCAATTCCAAGACACAGCAGCGGATCGGAAACGGCACGTTCTGGGTATTCAACAGCAGCAGGCCAAAGCTCGCTGGTACGATTCCTTCAAACAGCAACAAATCCCTCCCGTTCCCAATCGATCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGTTACGGCGACTCTTGCAAATATCTCCATCCCATTCCCAACAACAATCTACAGCAGCCCCCAGTCCTAACCACACCGTCACCGTCACCGCCACCAGGGAATGTGGTAGGAGTTTCATTGGACAATCTTCCCCCCTTGCTTCAGCCTCCACCTGAAGGTGTATATCCCCACCTTCCCTTCTCGACTGGGGATAAATTTGTAATTCTACGCACCTCTCATTACTGCATCTCTGTGTCTGTGTTTAATCATTTTATTAGCCTTTTATTTCTTCCAATGTTCCTCCCTGTGTTCCCATGA

Predicted protein sequences of Glyma20g22611

Limit To All Plant Sequences

>Glyma20g22611.1   sequence type=predicted peptide   gene model=Glyma20g22611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVKKCYCEKQFQDTAADRKRHVLGIQQQQAKARWYDSFKQQQIPPVPNRSLCFHFVNTGFCRYGDSCKYLHPIPNNNLQQPPVLTTPSPSPPPGNVVGVSLDNLPPLLQPPPEGVYPHLPFSTGDKFVILRTSHYCISVSVFNHFISLLFLPMFLPVFP*

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