|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G57540 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21310478-21311215 REVERSE LENGTH=103 | SoyBase | E_val: 3.00E-54 | ISS |
GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
UniRef100_C6SWM5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWM5_SOYBN | SoyBase | E_val: 8.00E-65 | ISS |
Glyma20g22240 not represented in the dataset |
Glyma20g22240 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.20g090800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g22240.1 sequence type=CDS gene model=Glyma20g22240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCTGAGGCGTTTCTTAGGCTATTCTGATGGTGAGGTCATGAGGTCTGATGCAAAACCTTGTTCCAGGCTAATGAGGCACACAGCTGCAATCTTTAGTGTTGGTGGAGCATTAGGATTTTGGGTCCTTTGCCGAATGCACTATGGTCCTCGAATTACAAATCCTAGGAGTCTTCGTTGGGCAGCATGTGGAGCTGTAACTGCGAGCTCTGGCACGGCTTTGCTGGTTCGTTTGTTTAGTCCTGAATGTGAGCCCCAGAATATAGCTGCTTATGACAATAAAAACTAA
>Glyma20g22240.1 sequence type=predicted peptide gene model=Glyma20g22240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLRRFLGYSDGEVMRSDAKPCSRLMRHTAAIFSVGGALGFWVLCRMHYGPRITNPRSLRWAACGAVTASSGTALLVRLFSPECEPQNIAAYDNKN*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||