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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma20g22240

Feature Type:gene_model
Chromosome:Gm20
Start:32264892
stop:32267027
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G57540AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21310478-21311215 REVERSE LENGTH=103 SoyBaseE_val: 3.00E-54ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006661GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6SWM5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWM5_SOYBN SoyBaseE_val: 8.00E-65ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g22240 not represented in the dataset

Glyma20g22240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g090800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g22240.1   sequence type=CDS   gene model=Glyma20g22240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCTGAGGCGTTTCTTAGGCTATTCTGATGGTGAGGTCATGAGGTCTGATGCAAAACCTTGTTCCAGGCTAATGAGGCACACAGCTGCAATCTTTAGTGTTGGTGGAGCATTAGGATTTTGGGTCCTTTGCCGAATGCACTATGGTCCTCGAATTACAAATCCTAGGAGTCTTCGTTGGGCAGCATGTGGAGCTGTAACTGCGAGCTCTGGCACGGCTTTGCTGGTTCGTTTGTTTAGTCCTGAATGTGAGCCCCAGAATATAGCTGCTTATGACAATAAAAACTAA

>Glyma20g22240.1   sequence type=predicted peptide   gene model=Glyma20g22240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLRRFLGYSDGEVMRSDAKPCSRLMRHTAAIFSVGGALGFWVLCRMHYGPRITNPRSLRWAACGAVTASSGTALLVRLFSPECEPQNIAAYDNKN*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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