SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G26710 | AT | Annotation by Michelle Graham. TAIR10: Glutamyl/glutaminyl-tRNA synthetase, class Ic | chr5:9305673-9308247 FORWARD LENGTH=719 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006424 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0043039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1147 | KOG | Glutamyl-tRNA synthetase | JGI | ISS | |
| PTHR10119 | Panther | GLUTAMYL-TRNA SYNTHETASE | JGI | ISS | |
| PTHR10119:SF16 | Panther | GLUTAMYL-TRNA SYNTHETASE | JGI | ISS | |
| PF00043 | PFAM | Glutathione S-transferase, C-terminal domain | JGI | ISS | |
| PF00749 | PFAM | tRNA synthetases class I (E and Q), catalytic domain | JGI | ISS | |
| PF03950 | PFAM | tRNA synthetases class I (E and Q), anti-codon binding domain | JGI | ISS | |
| UniRef100_G7IAE3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional aminoacyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7IAE3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NES7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NES7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g22170 not represented in the dataset |
Glyma20g22170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g28180 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g090100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g22170.1 sequence type=CDS gene model=Glyma20g22170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATATCAAAACCTTTGCCTTCGCCCCATCTTCTCCGCCGTTATCGGTAATCGCCGCCGCCAAGCTCGCCGGAATCTCTCCCACGATTGATACCGCTCTCTCTCCTGACTCACCTCCCTCATTTATCTTCTCCGATGGGCTAAAGTTGCACGGACCATATGCTCTTCTACGTTATATCGGGCGAGTTGCCAGCCTTCCTAATTTCTATGGGCAAAATCCATTTGAATCTAGCCAGATTGATGAATGGCTGGACTATGCTCCTATCCTCTCATTGGGCCCTGCTTTTGAGAATGCATGCAAATATATAGATGAGTACCTGGAGAAGCGTACTTTTTTGGTTGGTTATTCATTGTCAATTGCAGACCTAGCAATCTGGGCAGGTCTTGCAGGTTCTGGAAAGAGATGGGAAAGTCTAAGGAAGTCAAAGAAATATCCAAATCTTGCACGATGGTTCAATTCAATAGTGGAAGAACATGGTACTGCCTTAAATGAAGTCACATCAGTATATGCTGGCAAAAAAGGATTGGGTGAACCAACAGCAACCAAGTCAAAAGAACAGTCAGTAAACACTGATAAAGTGAAGAAGGTGAATGGAGATGTGTCTGAGAACAACAAAGGAGGAAGCAAACCTTCAGCAGAAATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCAAGTGGTTATCTTCATATTGGACACTCAAAAGCAGCTTTGTTGAACAAATATTTTGCTGAGCGATACCAGGGTCAGGTTATTGTGCGTTTTGATGATACCAATCCTGCTAAAGAAAGCAATGAATTTGTGGACAACCTGATTAAAGATATTGATACATTGGGCATCAAATATGAACAAATTACATATACATCAGATTACTTCCCTGAGTTGATGGAAATGGCTGAAAAATTAATTCGCGAGGGTAAAACATATGTTGATGACACTCCACGTGAACAAATGCAAAAAGAGAGAATGGATGGCATAGAATCTAAATGCAGAAATAATATAGTAGAGGAGAATCTAAAACTGTGGAAGGAAATGATTGCAGGAACAGAGAGGGGATTGCAGTGTTGTGTCCGTGGCAAGTTGGATATGCAGGACCCAAACAAATCACTTAGAGATCCTGTATATTATCGTTGCAATCCAATGCCCCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTCGCTTGTCCATATGTTGATGCTATAGAAGGAATCACGCATGCCCTTCGGTCTAGTGAATACCATGATCGCAATGCCCAATATTACCGCATTCAAGAGGACATGGGTCTTAGAAAAGTTCTTATCTATGAATTCAGCCGGTTGAATATGGTATACACTCTTTTGAGCAAACGAAAGCTTCTGTGGTTTGTACAAAATGGGAAAGTTGATGGATGGGATGATGCACGATTTCCTACAGTGCAAGGAATTGTGCGTAGAGGTTTGAAAATTGAAGCCCTGATACAGTTTATTGTTGAGCAGGGGGCGTCCAAAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATTAATAAGAAGATTATTGACCCTGTCTGTCCTAGACACACTGCTGTCATTGCAGACAGACGTGTGTTGTTGACTCTCACCGATGGTCCTGAGAAACCATTTGTCCGCATCATACCTCGGCACAAGAAATATGAAGCTGCCGGAGATAAAGTTACAACATATACTAAAAGGATATGGCTTGACCATGCTGATGCAGTGTCTTTATCAGCAGGTGAGGAAGTAACATTGATGGATTGGGGAAATGCCATAGTGAAGGAAATAGAGAAGGACCAAGATGGAAATATCACAGGGTTGAGCGGTGCTTTGCATCTTGAAGGATCTGTGAAGACCACAAAATTGAAACTCACTTGGCTACCTGAGATAGATGAACTAGTTTGCCTGACATTAGTGGAGTTTGATTATCTAATTACAAAGAAAAAGCTTGAAGAGGAGGATTTCATTGATGTGCTTAACCCATGTACCAAAAAGGAGACTTTAGCATATGGAGACTCCAACATGCGAAATCTTCAGCGTGGAGATGTATTGCAACTGGAGAGAAAGGGATATTTCAGGTGTGATTTACCCTTCATTCGCCCCTCACAACCAATTGTGCTATATGCAATCCCTGATGGTAGGCAACAGACAAGTTTGAAGTAA
>Glyma20g22170.1 sequence type=predicted peptide gene model=Glyma20g22170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIKTFAFAPSSPPLSVIAAAKLAGISPTIDTALSPDSPPSFIFSDGLKLHGPYALLRYIGRVASLPNFYGQNPFESSQIDEWLDYAPILSLGPAFENACKYIDEYLEKRTFLVGYSLSIADLAIWAGLAGSGKRWESLRKSKKYPNLARWFNSIVEEHGTALNEVTSVYAGKKGLGEPTATKSKEQSVNTDKVKKVNGDVSENNKGGSKPSAEIDLPDAEVGKVRLRFAPEPSGYLHIGHSKAALLNKYFAERYQGQVIVRFDDTNPAKESNEFVDNLIKDIDTLGIKYEQITYTSDYFPELMEMAEKLIREGKTYVDDTPREQMQKERMDGIESKCRNNIVEENLKLWKEMIAGTERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPMPHHRIGSKYKVYPTYDFACPYVDAIEGITHALRSSEYHDRNAQYYRIQEDMGLRKVLIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDARFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADRRVLLTLTDGPEKPFVRIIPRHKKYEAAGDKVTTYTKRIWLDHADAVSLSAGEEVTLMDWGNAIVKEIEKDQDGNITGLSGALHLEGSVKTTKLKLTWLPEIDELVCLTLVEFDYLITKKKLEEEDFIDVLNPCTKKETLAYGDSNMRNLQRGDVLQLERKGYFRCDLPFIRPSQPIVLYAIPDGRQQTSLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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