Glyma20g22160 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g22160

Feature Type:	gene_model
Chromosome:	Gm20
Start:	32087412
stop:	32093306
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g22160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09570	AT	Annotation by Michelle Graham. TAIR10: phytochrome A \| chr1:3095498-3099216 REVERSE LENGTH=1122	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009584	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of visible light	SoyBase	N/A	ISS
GO:0009585	GO-bp	Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009638	GO-bp	Annotation by Michelle Graham. GO Biological Process: phototropism	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0010161	GO-bp	Annotation by Michelle Graham. GO Biological Process: red light signaling pathway	SoyBase	N/A	ISS
GO:0010201	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to continuous far red light stimulus by the high-irradiance response system	SoyBase	N/A	ISS
GO:0010203	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to very low fluence red light stimulus	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0017006	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein-tetrapyrrole linkage	SoyBase	N/A	ISS
GO:0017148	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of translation	SoyBase	N/A	ISS
GO:0018106	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation	SoyBase	N/A	ISS
GO:0018298	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein-chromophore linkage	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016604	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear body	SoyBase	N/A	ISS
GO:0000155	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity	SoyBase	N/A	ISS
GO:0004673	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: G-protein coupled photoreceptor activity	SoyBase	N/A	ISS
GO:0009881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: photoreceptor activity	SoyBase	N/A	ISS
GO:0009883	GO-mf	Annotation by Michelle Graham. GO Molecular Function: red or far-red light photoreceptor activity	SoyBase	N/A	ISS
GO:0031516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: far-red light photoreceptor activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
PF00360	PFAM	Phytochrome region	JGI		ISS
PF00512	PFAM	His Kinase A (phosphoacceptor) domain	JGI		ISS
PF00989	PFAM	PAS fold	JGI		ISS
PF01590	PFAM	GAF domain	JGI		ISS
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI		ISS
PF08446	PFAM	PAS fold	JGI		ISS
UniRef100_B4YB07	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome n=1 Tax=Glycine max RepID=B4YB07_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B4YB07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phytochrome n=1 Tax=Glycine max RepID=B4YB07_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g22160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g22160

Paralog	Evidence	Comments
Glyma10g28170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g22160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g090000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g22160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g22160

Limit To All Plant Sequences

>Glyma20g22160.1   sequence type=CDS   gene model=Glyma20g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACCTCAAGGCCTAGCCAATCATCCAGCAATTCGGGGAGATCAAGACGTAGTGCTAGGGCTATGGCTCTGGCAACTGTAGATGCAAAACTCCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCGGTGCGCATCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGCATGACAAAGTTACAACAGCTTACCTCCACCACATGCAGAAAGGCAAGATGATTCAGCCTTTTGGGTGCTTGTTGGCCTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAACGCACCCGAAATGCTGACCATGGTGAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGCCCTTGGTATTGGCACTGACATAAAAACTCTATTCACTGCACCAAGTGCTTCTGCATTGCAGAAGGCTCTAGGATTTGCAGAGGTTTTGCTTCTTAACCCTGTCCTTATCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCGATTATCCATCGTGTCACTGGTAGTATGATCATTGACTTTGAGCCAGTCAAGCCGTATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGATTGCAATCGTTGCCTAGTGGGAGCATGGAAAGACTATGTGATACTATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATGGCTTATAAATTTCACGAGGATGATCATGGAGAGGTGATTGCTGAGATAACAAAGCCAGGTCTTGAGCCATATCTGGGTTTGCACTATCCAGCCACCGATATTCCCCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTTCGTATGATAGTTGATTGTCATGCAAAACACGTGAGGGTTCTTCAAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCCACCTTAAGAGCTCCTCATAGCTGCCACGCACAGTACATGGCGAACATGGATTCAATTGCTTCCCTGGTTATGGCAGTTGTAGTCAATGACAATGAAGAAGATGGGGACACTGATGCTATTCAGCCACAAAAGAGGAAGAGACTTTGGGGATTGGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAGTTTCTGGCTCAAGTATTTGCCATCCATGTTAACAAAGAAATAGAGTTGGAATATCAGATTATTGAGAAGAATATCCTGCGCACCCAGACACTCTTGTGTGATCTGGTGATGCGAGATGCACCCCTGGGAATTGTGTCAGAGAGCCCCAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCCTCATATATAAGAACAAGGTATGGAGATTAGGAGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTTTGGTTGTCTGAGTACCATATGGATTCCACAGGCTTCAGTACAGATAGCTTGTCTGATGCAGGGTTCCCATCGGCTCTTTCTCTGGGTGATGTTGTTTGTGGAATGGCAGCAGTTAGAGTAACTGCAAAAGACGTAGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAAGCTGGAGAAAAAGATGATGGTAGGAGGATGCATCCAAGATCATCATTCAAGGTTTTCCTTGATGTTGTGAAGGCAAGGAGCTTACCATGGAAGGAATATGAAATAGATGCTATGCATTCCTTGCAGTTAATACTGAGAAATGCATTCAAAGATACCGAGAGTATGGATTTAAACACAAAAGCAATTAATACAAGACTAAGCGATTTGAAGATTGAGGGGATGCAGGAACTGGAAGCAGTGACAAGTGAGATTGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAACATAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGGTGAAGCTATGGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTAACTTAGCACTGCTAGGTGAAGAAGAGAAGAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGATGGATTCTGGTCCTATTAGTTTAGTAGTAAATGCTTGCGCAAGCAGGGATCTTCGAGATAATGTTGTTGGGGTTTGTTTTGTGGCCCATGATATAACTGCTCAGAAGAATGTCATGGACAAATTTACGCGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCGCAATCCATTAATCCCTCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGACGAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGCTTTTTGGCACCCATATGGCTGCTTGTCGCCTAAAGAATCAAGAAGCTTTTGTTAATTTGGGTGTTGTACTTAATAAAGCCATGACTGGTTTGGAAACAGAGAAGGTTCCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTGGAATGCCTGCTTTCTGTGAGTAAGAAATTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCAGAGCTCCAACAAGCATTACATATTCAGCGCCTATCCGAGCAAACTGCCTTGAAGAGATTAAATGCATTAAGTTACATGAAAAGGCAAATCAGGAATCCTTTGTGTGGAATTATATTTTCCCGGAAAATGTTGGAGGGTACTGCCTTGGGAACAGAGCAGAAACAACTTCTACGCACTAGTGCTCAGTGCCAGCAGCAGCTTAGTAAAATTCTTGATGACTCAGATCTTGATAGTATCATAGATGGTTACTTGGATCTTGAAATGGCTGAGTTCACTCTGCATGAAGTTCTGGTTACCTCACTTAGTCAGGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGAGCAGATTGTGATGGAAACTTTATATGGTGATAGTCTTAGGCTTCAGCAGGTATTGGCTGACTTTTTACTTATTTCCATCAATTTCACTCCAAATGGAGGTCAGGTTGTTGTAGCAGGCACTCTAACCAAAGAACAGTTAGGCAAATCCGTCCATCTCGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTACCAGAAGCATTACTGAACCAGATGTTTGGAAACAACGGGCTAGAATCCGAGGAGGGTATTAGCCTACTGATCAGCAGAAAGCTGCTGAAGCTGATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGAACTTGCAGCAGCCCATAATTTGAAAGGTTAA

Predicted protein sequences of Glyma20g22160

Limit To All Plant Sequences

>Glyma20g22160.1   sequence type=predicted peptide   gene model=Glyma20g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSRPSQSSSNSGRSRRSARAMALATVDAKLHATFEESGSSFDYSSSVRISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSASALQKALGFAEVLLLNPVLIHCKTSGKPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVKCDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDVVCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKARSLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVRLIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLLTLVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELFGTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQIRNPLCGIIFSRKMLEGTALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMTKSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGISLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain