SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04360 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:1167507-1168652 REVERSE LENGTH=381 | SoyBase | E_val: 2.00E-68 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR14155 | Panther | RING FINGER PROTEIN 6/12/38 | JGI | ISS | |
| PTHR14155:SF2 | Panther | RING-FINGER PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7I5E5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7I5E5_MEDTR | SoyBase | E_val: 1.00E-93 | ISS |
| UniRef100_UPI000233ED55 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ED55 related cluster n=1 Tax=unknown RepID=UPI000233ED55 | SoyBase | E_val: 0 | ISS |
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Glyma20g22040 not represented in the dataset |
Glyma20g22040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g01000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g088900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g22040.3 sequence type=transcript gene model=Glyma20g22040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATTGCTCTTCACTCTCTAATTAACCACTCCCATTCTCTGGATTTTGGGAAAAACCATCCCCTCTTCCTTCACTTAGTGCGTTAAGCATATATATAATAGATTTTCCAGGGAAAGTGTCATAAGACTCAACTTCATGCAATATATTCCAATATCTAAGAGAACCCTTTTTTTGTCTGTAGAATCTACTATGGATTTTGTGAGCCAAAGGCACCTACTGCATTCTATGCAACAAGCTCATTCCCCGTGCACAACTCCCCTTAGTGATGTCTCATGAAGACCCATCTGCACCATACTCAACAGCATCTGAGCCTAGAGGGCTAGAGGAAGCAGTGATCAAATTAATTCCAGTGATTCAATTTAAGCCAGAAGAAGGTGAAAGAAGCTTTAGTGAGTGTTCAGTTTGCTTGAGTGAGTTTCAGCAAGACGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCTTATTGCCCTCTTTGTAGAAGAACTGTTTCCTTGACAAGCCAAGTCCACCATCATGTAGACCAAGTCAACCTTCTTCTCACTCCAAGGCTTTCCCCTCAAGGTCAAAGCCAAAACAATGAAAACCTCATTGGTGCTGCTGAGGATGAAGGAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAAACTTGCAAGAAAGACAAGAGTTACCAACATGTCGTATTATTAGTCTTTCTTCACAAATGAAGCTATTGGAGGAGAAGAAAGCAAGGAAGCTTCAAAAAGTGACAAGTTTGGGAGATGAGTGTATAGGTGTTAGATCCAAAGATGAAAGGTTATCAGTTCAAGCCATGAGAAGGTCCTTTTCCATGGACTCATCGGTGGATAGAAAGTTTTATGAGGCAGTTCAAGAGGCTTTACAACAACCACAACAACAAAATGGGAATGTTCTTGAGGTCAGCACAATTGAAGCTTGTGATGGTAGTGGTAGAGTTAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGTACTACCTGAGACCCCTGATTTTTTTATTTAATAAAATGTATTTTAGTTCTCATATTTTCGCTAAAAATTCATCTTAGTTACTATACTTTAAAAATAATAATTTTGGTCTTCAATTTTTTTTAATAATCGGTGAATTTGGTCTTTACCTTACTATCTTTTTA
>Glyma20g22040.2 sequence type=CDS gene model=Glyma20g22040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATATATTCCAATATCTAAGAGAACCCTTTTTTTGTCTGTAGAATCTACTATGGATTTTGTGAGCCAAAGGCACCTACTGCATTCTATGCAACAAGCTCATTCCCCGTGCACAACTCCCCTTAGTGATGTGACTAATCCTTCTCCATATAATTATTCCTTCTTAGTAATCCTTGTGATTGGAATGATGTTTACAGCTTTCTTCCTTATAGGCTACTACATATTAGTTGTCAAGTGCTGCCTCAATTGGCCCCATGTTGATCATGTAAGAATTTTTTCTCTATCTAGGTCTCATGAAGACCCATCTGCACCATACTCAACAGCATCTGAGCCTAGAGGGCTAGAGGAAGCAGTGATCAAATTAATTCCAGTGATTCAATTTAAGCCAGAAGAAGGTGAAAGAAGCTTTAGTGAGTGTTCAGTTTGCTTGAGTGAGTTTCAGCAAGACGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCTTATTGCCCTCTTTGTAGAAGAACTGTTTCCTTGACAAGCCAAGTCCACCATCATGTAGACCAAGTCAACCTTCTTCTCACTCCAAGGCTTTCCCCTCAAGGTCAAAGCCAAAACAATGAAAACCTCATTGGTGCTGCTGAGGATGAAGGAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAAACTTGCAAGAAAGACAAGAGTTACCAACATGTCGTATTATTAGTCTTTCTTCACAAATGAAGCTATTGGAGGAGAAGAAAGCAAGGAAGCTTCAAAAAGTGACAAGTTTGGGAGATGAGTGTATAGGTGTTAGATCCAAAGATGAAAGGTTATCAGTTCAAGCCATGAGAAGGTCCTTTTCCATGGACTCATCGGTGGATAGAAAGTTTTATGAGGCAGTTCAAGAGGCTTTACAACAACCACAACAACAAAATGGGAATGTTCTTGAGGTCAGCACAATTGAAGCTTGTGATGGTAGTGGTAGAGTTAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGTACTACCTGAGACCCCTGATTTTTTTATTTAA >Glyma20g22040.3 sequence type=CDS gene model=Glyma20g22040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCATGAAGACCCATCTGCACCATACTCAACAGCATCTGAGCCTAGAGGGCTAGAGGAAGCAGTGATCAAATTAATTCCAGTGATTCAATTTAAGCCAGAAGAAGGTGAAAGAAGCTTTAGTGAGTGTTCAGTTTGCTTGAGTGAGTTTCAGCAAGACGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCTTATTGCCCTCTTTGTAGAAGAACTGTTTCCTTGACAAGCCAAGTCCACCATCATGTAGACCAAGTCAACCTTCTTCTCACTCCAAGGCTTTCCCCTCAAGGTCAAAGCCAAAACAATGAAAACCTCATTGGTGCTGCTGAGGATGAAGGAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAAACTTGCAAGAAAGACAAGAGTTACCAACATGTCGTATTATTAGTCTTTCTTCACAAATGAAGCTATTGGAGGAGAAGAAAGCAAGGAAGCTTCAAAAAGTGACAAGTTTGGGAGATGAGTGTATAGGTGTTAGATCCAAAGATGAAAGGTTATCAGTTCAAGCCATGAGAAGGTCCTTTTCCATGGACTCATCGGTGGATAGAAAGTTTTATGAGGCAGTTCAAGAGGCTTTACAACAACCACAACAACAAAATGGGAATGTTCTTGAGGTCAGCACAATTGAAGCTTGTGATGGTAGTGGTAGAGTTAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGTACTACCTGAGACCCCTGATTTTTTTATTTAA
>Glyma20g22040.2 sequence type=predicted peptide gene model=Glyma20g22040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQYIPISKRTLFLSVESTMDFVSQRHLLHSMQQAHSPCTTPLSDVTNPSPYNYSFLVILVIGMMFTAFFLIGYYILVVKCCLNWPHVDHVRIFSLSRSHEDPSAPYSTASEPRGLEEAVIKLIPVIQFKPEEGERSFSECSVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNAYCPLCRRTVSLTSQVHHHVDQVNLLLTPRLSPQGQSQNNENLIGAAEDEGGFVVIDLDGEHDRDQNLQERQELPTCRIISLSSQMKLLEEKKARKLQKVTSLGDECIGVRSKDERLSVQAMRRSFSMDSSVDRKFYEAVQEALQQPQQQNGNVLEVSTIEACDGSGRVKRSFFSFGHGSRSRSAVLPETPDFFI* >Glyma20g22040.3 sequence type=predicted peptide gene model=Glyma20g22040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSHEDPSAPYSTASEPRGLEEAVIKLIPVIQFKPEEGERSFSECSVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNAYCPLCRRTVSLTSQVHHHVDQVNLLLTPRLSPQGQSQNNENLIGAAEDEGGFVVIDLDGEHDRDQNLQERQELPTCRIISLSSQMKLLEEKKARKLQKVTSLGDECIGVRSKDERLSVQAMRRSFSMDSSVDRKFYEAVQEALQQPQQQNGNVLEVSTIEACDGSGRVKRSFFSFGHGSRSRSAVLPETPDFFI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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