Glyma20g22010 - SoyBase

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Report for Sequence Feature Glyma20g22010

Feature Type:	gene_model
Chromosome:	Gm20
Start:	31836767
stop:	31842295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g22010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14410	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:8300418-8301503 FORWARD LENGTH=277	SoyBase	E_val: 3.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR23042	Panther	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	JGI		ISS
PTHR23042:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7I5E7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Basic helix-loop-helix transcription factor n=1 Tax=Medicago truncatula RepID=G7I5E7_MEDTR	SoyBase	E_val: 1.00E-118	ISS
UniRef100_I1NER6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NER6_SOYBN	SoyBase	E_val: 7.00E-161	ISS

Expression Patterns of Glyma20g22010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g22010

Paralog	Evidence	Comments
Glyma10g01010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g22010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g088600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g22010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g22010

Limit To All Plant Sequences

>Glyma20g22010.1   sequence type=CDS   gene model=Glyma20g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATAACAATAATAGTGTGAGCACCGAAATTGACATTCCAGGTGATGCTGTTGCTTGTCAAGAGAACACCAAGAAGAGGGGACGCACCGATTCATGCTTCAAGGCGGGATCAAAAGCTTGCCGTGAAAAATTGCGAAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCAGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACCGAAGCCCAGGAGCTCAAAAAAACAAATGAAAAATTACTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTACGCGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAGGCCTTGCCCGTTGCACCAGCAGGGTTTATGGCTCCACCTGTAGCTGCTGCTGCTGCAGCATATCAAGCAGGGGTGAACAAGATGGCCGTATATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGTCAGAGACACATCACATGATCATGAGCTCAGGCCTCCAGCTGCATAG

Predicted protein sequences of Glyma20g22010

Limit To All Plant Sequences

>Glyma20g22010.1   sequence type=predicted peptide   gene model=Glyma20g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSLEDSGCWDFLDYSFIDQAPPDFLWSNNNNSVSTEIDIPGDAVACQENTKKRGRTDSCFKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKKTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPVAPAGFMAPPVAAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSVRDTSHDHELRPPAA*

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