Glyma20g21983 - SoyBase

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Report for Sequence Feature Glyma20g21983

Feature Type:	gene_model
Chromosome:	Gm20
Start:	31807410
stop:	31808954
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21983

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43440	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr5:17455356-17456608 REVERSE LENGTH=365	SoyBase	E_val: 8.00E-56	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009815	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_C6TKT7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKT7_SOYBN	SoyBase	E_val: 3.00E-83	ISS
UniRef100_G7I5H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7I5H7_MEDTR	SoyBase	E_val: 1.00E-64	ISS

Expression Patterns of Glyma20g21983

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g21983 not represented in the dataset	Glyma20g21983 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g21983

Paralog	Evidence	Comments
Glyma10g01050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g21983 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g088400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21983

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g21983

Limit To All Plant Sequences

>Glyma20g21983.1   sequence type=CDS   gene model=Glyma20g21983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGATTACTCAAATCAAGTAATGAAACTAGGGACTTTATTGTTTGAGTTATTATCAGAAGCTCTTAGTTTGAATTCAACCTACTTAAGAGATACAAGTTGCGATGTGGGACAATTTGCTTTTGGTCATTACTATCCTTCCTATCTTGAACCAAACTTAACTCTGGGAACCATAAAGCATGTTGATGTTAATTTCATCACAGTGCTTCTACAAGGCCATATAGGTGGCCTCCAAGTTCTTCATCAGAACACACAAATCGATGTAACCCCTGTGCCTGGGGCTCTATTTATTATATGTGATCCTTCACCAATATGGCTAATTCCTAATATTCTTGAATGCCAACTTATCTCAAATGACAAATTCAAGAGTGGTCAACATAGAGTACCGGCAAATACTGCAGGTCCAAGAGTCTCCATTTCCAGCATTCATCCATCTTCAAGGACTTATGGTCCCATCATGGAACTTTTATCTGAAGACAATCCTGCAAAATATAGAGAATTTTCAATTCCAGAATTTACAGCTCACTACTGA

Predicted protein sequences of Glyma20g21983

Limit To All Plant Sequences

>Glyma20g21983.1   sequence type=predicted peptide   gene model=Glyma20g21983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDYSNQVMKLGTLLFELLSEALSLNSTYLRDTSCDVGQFAFGHYYPSYLEPNLTLGTIKHVDVNFITVLLQGHIGGLQVLHQNTQIDVTPVPGALFIICDPSPIWLIPNILECQLISNDKFKSGQHRVPANTAGPRVSISSIHPSSRTYGPIMELLSEDNPAKYREFSIPEFTAHY*

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