Glyma20g21780 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g21780

Feature Type:	gene_model
Chromosome:	Gm20
Start:	31385164
stop:	31389333
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04580	AT	Annotation by Michelle Graham. TAIR10: Signal transduction histidine kinase, hybrid-type, ethylene sensor \| chr3:1235576-1237965 REVERSE LENGTH=766	SoyBase	E_val: 0	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010105	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0000155	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0004673	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0051740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ethylene binding	SoyBase	N/A	ISS
PTHR24423	Panther	TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED	JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF00512	PFAM	His Kinase A (phosphoacceptor) domain	JGI		ISS
PF01590	PFAM	GAF domain	JGI		ISS
UniRef100_B9HKG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene receptor 5 n=2 Tax=Populus trichocarpa RepID=B9HKG1_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DD93	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD93 related cluster n=1 Tax=unknown RepID=UPI000233DD93	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g21780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g21780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g087000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g21780

Limit To All Plant Sequences

>Glyma20g21780.3   sequence type=transcript   gene model=Glyma20g21780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAACCACATTGCACACAACACAGGACATAATACACTTCTCACACCCCTTTCTCTCTTTAACCAAACAACACAATACTACTACTATGGTTGTGTTACTTGAGCAATACCTTAACATCCACAACAAGTACAGAAACACCACTTTCATCATTTTTCTTCATCTGGGTGTCTCTTACTTATGCTCTTTTCTATGTTCTACTTCTGCCCTTTACTTGTCACACACAACGCAATACAAAACTCTGACACCCCCACTCACCAGATTACAGGCACGAGGTAGTTAAGCTAAGCTAAGCTGGATTTGTGCACAGTAAGCAAGGAGACCATAGTTGAAGAAGCAACATTGGGAGTTGGTGGTAGAAAAATTGTTGAGGCCTTTGCTTCTTTATTTTTTTTTTCTGAGTTCGTTATTCTTCACTGGTGTGTGGATTAATTTGTATGTATCACTAGATGGATTGAAGAAGCATCACATTGGGTCAATGTTAAAGGCAGTGTCATTTGAACTGTTGTTAATATGCTTGCTACTTCTTCGCACATGTGTGTGTGCAACAACAGATAATGGCTTTCCCAGATGTAACTGTGATGATGAGTCCAGCTTGTGGACTATTGAGACCATTTTGGAGTGCCAGAGAATTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTACTTTACTTTGTTAGTTGCTCAAACTTCCCTTTCAAATGGGTCCTCTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCACTCACTGTCTTCAAAATCCTCACTGCCTTGGTGTCATGTGCAACTACCATTACCCTCCTCACCTTGATCCCTATGCTGTTGAAAGTGAAGGTTAGAGAATTGATGCTAAAGAAAAAGACTTGGGATCTTGGGAGGGAGGTTGGAATCATAATGAAACAGAAGGAGGCTGCAATGCATGTGAGGATGCTCACTCAGGAGATTCGCAAGTCGTTGGATAGGCATAAGATTCTCTACACCACCTTGGTTGAGCTGTCTAAGACACTTGGTTTGCAGAATTGTGCAGTGTGGATGCCAAATGTTGAGAAAACCGAGATGAACCTTACGCATGAATTGAATGGGAGGAATGTTAACTGTTCTATACCCATTACTAATCCGGATGTTGTGAGAATTAAGGGAAGTGACGAAGTGAACATAATTGATTCTGATTCAATACTTGCCACTGCTAGCAGTGGAGTTTATGGTGGGGCAGGACCAGTTGCTGCCATCCGCATGCCGATGCTTCAGGTTTGCAATTTCAAAGGGGGAACGCCAGAGCTAAGGCAGACGTGTTATGCCATATTGGTTTTGACTCTTCCTAGTGCGGAGCCTAGATCATGGGGCGCTCAAGAGCTGGAGATCATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCTCTGTCTCATGCCTCGATTCTCGAAGAGTCTCAGCTCATGAGGGAAAAGTTGGAGGAGCAAAATCGAGCTTTGCAAATGGAAAAGATGAATACAATGATGGCGAGCCAGGCGAGAGCTTCGTTTCAGAAGGTCACGAGTAATGGAATGAGAAGGCCAATGCACTCAATTTTGGGGTTGCTTTCGATGATGCAAGATGATAATTTGAAGAGTGAACAGAAACTTATTGTGAATTCAATGCTAAGGACCAGCACTGTCTTGTCAAACTTGATAAATGATGCCATGGACTACTCAACTAGGGATGATGGAAGATTCCCTTTGGAGATGAAACCTTTTGGATTGCATGCTATGGTGAAAGAGGCAGCTTGTCTTGCCAAGTGCATGTGTGTTTATAGGGTCATTGGCTTTGTGGTTGATGTTGACAAATTTGAGATAGGGATCAATAATGGTGATCCTGAATTGGAGAGTTCAGTTCCTTCAGGGCAGCTTGCGGGTACAGATCGCACTAGTGATAAGGTTGAGGAAAGATTGAGCTTTAGCATTTGCAAGAGGATAATCCAGTTGATGCAAGGGAACATATGGTTAGTACCAAACGCTCAAGGTTTTCCTCAAGTCATGGCCCTTTTTCTTCGGTTTCAACTGTGGCGGTCTATTGCCGTATCCAACTCTGAACCTGGGGAAAATTCTGAGACATCCAATTCAAATTCTTTCTTCAGAGGTCTGCAGGTCTTGTTGGCCGACAATGACGATGTAAATAGAGCGGTGACACAGAAGTTGCTTCAGAAACTAGGCTGTGTTGTGACTTCTGTTTCTTCAGGATTTGAATGCCTTAACGTCATTGGACCTGCTGGTTCTTCCTTTCAAGTCATTCTTTTGGATCTTCACATGCCTGAGCTTGATGGGTTCGAAGTTGCAACGAGGATTCCCAAGTTCAGAAGCCGGAATTGGCCTGTGATTGTTGCCTTGACTGCAAGCACAGATGATTTGTGGGAAAGATGCATGCAAATTGGCATGAATGGAGTCATAAGAAAGCCAGTTTTGTTGCATGGAATCGCTAGTGAACTCAGAAGAATAATATTGCAGGGAAATAGTGTCATGTGA

Coding sequences of Glyma20g21780

Limit To All Plant Sequences

>Glyma20g21780.2   sequence type=CDS   gene model=Glyma20g21780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAAGGCAGTGTCATTTGAACTGTTGTTAATATGCTTGCTACTTCTTCGCACATGTGTGTGTGCAACAACAGATAATGGCTTTCCCAGATGTAACTGTGATGATGAGTCCAGCTTGTGGACTATTGAGACCATTTTGGAGTGCCAGAGAATTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTACTTTACTTTGTTAGTTGCTCAAACTTCCCTTTCAAATGGGTCCTCTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCACTCACTGTCTTCAAAATCCTCACTGCCTTGGTGTCATGTGCAACTACCATTACCCTCCTCACCTTGATCCCTATGCTGTTGAAAGTGAAGGTTAGAGAATTGATGCTAAAGAAAAAGACTTGGGATCTTGGGAGGGAGGTTGGAATCATAATGAAACAGAAGGAGGCTGCAATGCATGTGAGGATGCTCACTCAGGAGATTCGCAAGTCGTTGGATAGGCATAAGATTCTCTACACCACCTTGGTTGAGCTGTCTAAGACACTTGGTTTGCAGAATTGTGCAGTGTGGATGCCAAATGTTGAGAAAACCGAGATGAACCTTACGCATGAATTGAATGGGAGGAATGTTAACTGTTCTATACCCATTACTAATCCGGATGTTGTGAGAATTAAGGGAAGTGACGAAGTGAACATAATTGATTCTGATTCAATACTTGCCACTGCTAGCAGTGGAGTTTATGGTGGGGCAGGACCAGTTGCTGCCATCCGCATGCCGATGCTTCAGGTTTGCAATTTCAAAGGGGGAACGCCAGAGCTAAGGCAGACGTGTTATGCCATATTGGTTTTGACTCTTCCTAGTGCGGAGCCTAGATCATGGGGCGCTCAAGAGCTGGAGATCATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCTCTGTCTCATGCCTCGATTCTCGAAGAGTCTCAGCTCATGAGGGAAAAGTTGGAGGAGCAAAATCGAGCTTTGCAAATGGAAAAGATGAATACAATGATGGCGAGCCAGGCGAGAGCTTCGTTTCAGAAGGTCACGAGTAATGGAATGAGAAGGCCAATGCACTCAATTTTGGGGTTGCTTTCGATGATGCAAGATGATAATTTGAAGAGTGAACAGAAACTTATTGTGAATTCAATGCTAAGGACCAGCACTGTCTTGTCAAACTTGATAAATGATGCCATGGACTACTCAACTAGGGATGATGGAAGATTCCCTTTGGAGATGAAACCTTTTGGATTGCATGCTATGGTGAAAGAGGCAGCTTGTCTTGCCAAGTGCATGTGTGTTTATAGGGTCATTGGCTTTGTGGTTGATGTTGACAAATTTGAGATAGGGATCAATAATGGTGATCCTGAATTGGAGAGTTCAGTTCCTTCAGGGCAGCTTGCGGGTACAGATCGCACTAGTGATAAGGTTGAGGAAAGATTGAGCTTTAGCATTTGCAAGAGGATAATCCAGTTGATGCAAGGGAACATATGGTTAGTACCAAACGCTCAAGGTTTTCCTCAAGTCATGGCCCTTTTTCTTCGGTTTCAACTGTGGCGGTCTATTGCCGTATCCAACTCTGAACCTGGGGAAAATTCTGAGACATCCAATTCAAATTCTTTCTTCAGAGGTCTGCAGGTCTTGTTGGCCGACAATGACGATGTAAATAGAGCGGTGACACAGAAGTTGCTTCAGAAACTAGGCTGTGTTGTGACTTCTGTTTCTTCAGGATTTGAATGCCTTAACGTCATTGGACCTGCTGGTTCTTCCTTTCAAGTCATTCTTTTGGATCTTCACATGCCTGAGCTTGATGGGTTCGAAGTTGCAACGAGGATTCCCAAGTTCAGAAGCCGGAATTGGCCTGTGATTGTTGCCTTGACTGCAAGCACAGATGATTTGTGGGAAAGATGCATGCAAATTGGCATGAATGGAGTCATAAGAAAGCCAGTTTTGTTGCATGGAATCGCTAGTGAACTCAGAAGAATAATATTGCAGGGAAATAGTGTCATGTGA

>Glyma20g21780.3   sequence type=CDS   gene model=Glyma20g21780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAAGGCAGTGTCATTTGAACTGTTGTTAATATGCTTGCTACTTCTTCGCACATGTGTGTGTGCAACAACAGATAATGGCTTTCCCAGATGTAACTGTGATGATGAGTCCAGCTTGTGGACTATTGAGACCATTTTGGAGTGCCAGAGAATTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTACTTTACTTTGTTAGTTGCTCAAACTTCCCTTTCAAATGGGTCCTCTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCACTCACTGTCTTCAAAATCCTCACTGCCTTGGTGTCATGTGCAACTACCATTACCCTCCTCACCTTGATCCCTATGCTGTTGAAAGTGAAGGTTAGAGAATTGATGCTAAAGAAAAAGACTTGGGATCTTGGGAGGGAGGTTGGAATCATAATGAAACAGAAGGAGGCTGCAATGCATGTGAGGATGCTCACTCAGGAGATTCGCAAGTCGTTGGATAGGCATAAGATTCTCTACACCACCTTGGTTGAGCTGTCTAAGACACTTGGTTTGCAGAATTGTGCAGTGTGGATGCCAAATGTTGAGAAAACCGAGATGAACCTTACGCATGAATTGAATGGGAGGAATGTTAACTGTTCTATACCCATTACTAATCCGGATGTTGTGAGAATTAAGGGAAGTGACGAAGTGAACATAATTGATTCTGATTCAATACTTGCCACTGCTAGCAGTGGAGTTTATGGTGGGGCAGGACCAGTTGCTGCCATCCGCATGCCGATGCTTCAGGTTTGCAATTTCAAAGGGGGAACGCCAGAGCTAAGGCAGACGTGTTATGCCATATTGGTTTTGACTCTTCCTAGTGCGGAGCCTAGATCATGGGGCGCTCAAGAGCTGGAGATCATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCTCTGTCTCATGCCTCGATTCTCGAAGAGTCTCAGCTCATGAGGGAAAAGTTGGAGGAGCAAAATCGAGCTTTGCAAATGGAAAAGATGAATACAATGATGGCGAGCCAGGCGAGAGCTTCGTTTCAGAAGGTCACGAGTAATGGAATGAGAAGGCCAATGCACTCAATTTTGGGGTTGCTTTCGATGATGCAAGATGATAATTTGAAGAGTGAACAGAAACTTATTGTGAATTCAATGCTAAGGACCAGCACTGTCTTGTCAAACTTGATAAATGATGCCATGGACTACTCAACTAGGGATGATGGAAGATTCCCTTTGGAGATGAAACCTTTTGGATTGCATGCTATGGTGAAAGAGGCAGCTTGTCTTGCCAAGTGCATGTGTGTTTATAGGGTCATTGGCTTTGTGGTTGATGTTGACAAATTTGAGATAGGGATCAATAATGGTGATCCTGAATTGGAGAGTTCAGTTCCTTCAGGGCAGCTTGCGGGTACAGATCGCACTAGTGATAAGGTTGAGGAAAGATTGAGCTTTAGCATTTGCAAGAGGATAATCCAGTTGATGCAAGGGAACATATGGTTAGTACCAAACGCTCAAGGTTTTCCTCAAGTCATGGCCCTTTTTCTTCGGTTTCAACTGTGGCGGTCTATTGCCGTATCCAACTCTGAACCTGGGGAAAATTCTGAGACATCCAATTCAAATTCTTTCTTCAGAGGTCTGCAGGTCTTGTTGGCCGACAATGACGATGTAAATAGAGCGGTGACACAGAAGTTGCTTCAGAAACTAGGCTGTGTTGTGACTTCTGTTTCTTCAGGATTTGAATGCCTTAACGTCATTGGACCTGCTGGTTCTTCCTTTCAAGTCATTCTTTTGGATCTTCACATGCCTGAGCTTGATGGGTTCGAAGTTGCAACGAGGATTCCCAAGTTCAGAAGCCGGAATTGGCCTGTGATTGTTGCCTTGACTGCAAGCACAGATGATTTGTGGGAAAGATGCATGCAAATTGGCATGAATGGAGTCATAAGAAAGCCAGTTTTGTTGCATGGAATCGCTAGTGAACTCAGAAGAATAATATTGCAGGGAAATAGTGTCATGTGA

Predicted protein sequences of Glyma20g21780

Limit To All Plant Sequences

>Glyma20g21780.2   sequence type=predicted peptide   gene model=Glyma20g21780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKAVSFELLLICLLLLRTCVCATTDNGFPRCNCDDESSLWTIETILECQRIGDFLIAVAYFSIPIELLYFVSCSNFPFKWVLFQFIAFIVLCGMTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATTITLLTLIPMLLKVKVRELMLKKKTWDLGREVGIIMKQKEAAMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKTEMNLTHELNGRNVNCSIPITNPDVVRIKGSDEVNIIDSDSILATASSGVYGGAGPVAAIRMPMLQVCNFKGGTPELRQTCYAILVLTLPSAEPRSWGAQELEIIKVVADQVAVALSHASILEESQLMREKLEEQNRALQMEKMNTMMASQARASFQKVTSNGMRRPMHSILGLLSMMQDDNLKSEQKLIVNSMLRTSTVLSNLINDAMDYSTRDDGRFPLEMKPFGLHAMVKEAACLAKCMCVYRVIGFVVDVDKFEIGINNGDPELESSVPSGQLAGTDRTSDKVEERLSFSICKRIIQLMQGNIWLVPNAQGFPQVMALFLRFQLWRSIAVSNSEPGENSETSNSNSFFRGLQVLLADNDDVNRAVTQKLLQKLGCVVTSVSSGFECLNVIGPAGSSFQVILLDLHMPELDGFEVATRIPKFRSRNWPVIVALTASTDDLWERCMQIGMNGVIRKPVLLHGIASELRRIILQGNSVM*

>Glyma20g21780.3   sequence type=predicted peptide   gene model=Glyma20g21780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKAVSFELLLICLLLLRTCVCATTDNGFPRCNCDDESSLWTIETILECQRIGDFLIAVAYFSIPIELLYFVSCSNFPFKWVLFQFIAFIVLCGMTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATTITLLTLIPMLLKVKVRELMLKKKTWDLGREVGIIMKQKEAAMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKTEMNLTHELNGRNVNCSIPITNPDVVRIKGSDEVNIIDSDSILATASSGVYGGAGPVAAIRMPMLQVCNFKGGTPELRQTCYAILVLTLPSAEPRSWGAQELEIIKVVADQVAVALSHASILEESQLMREKLEEQNRALQMEKMNTMMASQARASFQKVTSNGMRRPMHSILGLLSMMQDDNLKSEQKLIVNSMLRTSTVLSNLINDAMDYSTRDDGRFPLEMKPFGLHAMVKEAACLAKCMCVYRVIGFVVDVDKFEIGINNGDPELESSVPSGQLAGTDRTSDKVEERLSFSICKRIIQLMQGNIWLVPNAQGFPQVMALFLRFQLWRSIAVSNSEPGENSETSNSNSFFRGLQVLLADNDDVNRAVTQKLLQKLGCVVTSVSSGFECLNVIGPAGSSFQVILLDLHMPELDGFEVATRIPKFRSRNWPVIVALTASTDDLWERCMQIGMNGVIRKPVLLHGIASELRRIILQGNSVM*

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