SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G35620 | AT | Annotation by Michelle Graham. TAIR10: Eukaryotic initiation factor 4E protein | chr5:13824946-13826331 REVERSE LENGTH=198 | SoyBase | E_val: 1.00E-83 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0050687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response to virus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000340 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA 7-methylguanosine cap binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1670 | KOG | Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins | JGI | ISS | |
| PTHR11960 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | JGI | ISS | |
| PF01652 | PFAM | Eukaryotic initiation factor 4E | JGI | ISS | |
| UniRef100_C6TKG0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKG0_SOYBN | SoyBase | E_val: 2.33E-156 | ISS |
| UniRef100_D3TI64 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor iso4E n=2 Tax=Phaseolus vulgaris RepID=D3TI64_PHAVU | SoyBase | E_val: 1.00E-128 | ISS |
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Glyma20g21493 not represented in the dataset |
Glyma20g21493 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g27570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g085800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g21493.2 sequence type=transcript gene model=Glyma20g21493 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTAACCTATTTTATATATGTTACGCTTTTGGGCCAAAGTTGGGTCCAAATACATACAAAGCCCTCAAAGCATAATCTCACTCGTATTAGCGTTGCTGAGAGAGAAAGACAAATGGCAACAAGCGAAGAAGTGGTTGCGGCGGCGCCGGAGGCAGCCGCGCTGGAGGCAGGGCTGAAGCACAAACTGGAGAGAAAATGGACGTTTTGGTGCGACAACCAATCCAAACCCAAACAGGGCGCTGCTTGGGGTACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTTCACTTGTTCAAGACTGGGATTGAGCCTAAATGGGAAGATCCTGAGTGTGCCAATGGAGGAAAGTGGTCAGTCACCAGCAACAGCGGCAGGAAGGCTAACCTTGATAACATGTGGCTTGAAACTATGATGGCTTTGATTGGGGAGCAATTTGAGGATGCCGAGGACATATGTGGTGTTGTTGCGAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACACCTCTTGAGCATCTTCTTGCACTTGTGCTGGGCTGCTGGCAAAGCTGTAGTATTTGATATCTTCATCATGTGCCATATGTACTAAAGAGCATACTACTACTTTGGTGGATGGGTGATCTGGAGCTTTTGGAGGAGCTTCAGTGGTTATGGTGTTTGATCGTGGTGGGTGGCACGGTCCTGTTAGGAAAGAGTTATTTGCATTTTTTTTCTTTAATTTTCATGCAATTTATGTCTATTTTTATTCTTAAAGAAATGTGTTTTGATTATTGTATATTTTTCTGTAATTTGTGTAAGTTTTTAACCTCCAGAAATTACATTTTAATTTGGAATCATCCCACTCTTGCGCCAAGCC
>Glyma20g21493.1 sequence type=CDS gene model=Glyma20g21493 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTAACCTATTTTATATATGTTACGCTTTTGGGCCAAAGTTGGGTCCAAATACATACAAAGCCCTCAAAGCATAATCTCACTCGTATTAGCGTTGCTGAGAGAGAAAGACAAATGGCAACAAGCGAAGAAGTGGTTGCGGCGGCGCCGGAGGCAGCCGCGCTGGAGGCAGGGCTGAAGCACAAACTGGAGAGAAAATGGACGTTTTGGTGCGACAACCAATCCAAACCCAAACAGGGCGCTGCTTGGGGTACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTTCACTTGTTCAAGACTGGGATTGAGCCTAAATGGGAAGATCCTGAGTGTGCCAATGGAGGAAAGTGGTCAGTCACCAGCAACAGCGGCAGGAAGGCTAACCTTGATAACATGTGGCTTGAAACTATGATGGCTTTGATTGGGGAGCAATTTGAGGATGCCGAGGACATATGTGGTGTTGTTGCGAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATGATGATTCTAGAACCAAAGGAGCACCAAAGGGTCGATACGCCGTATAA >Glyma20g21493.2 sequence type=CDS gene model=Glyma20g21493 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTAACCTATTTTATATATGTTACGCTTTTGGGCCAAAGTTGGGTCCAAATACATACAAAGCCCTCAAAGCATAATCTCACTCGTATTAGCGTTGCTGAGAGAGAAAGACAAATGGCAACAAGCGAAGAAGTGGTTGCGGCGGCGCCGGAGGCAGCCGCGCTGGAGGCAGGGCTGAAGCACAAACTGGAGAGAAAATGGACGTTTTGGTGCGACAACCAATCCAAACCCAAACAGGGCGCTGCTTGGGGTACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTTCACTTGTTCAAGACTGGGATTGAGCCTAAATGGGAAGATCCTGAGTGTGCCAATGGAGGAAAGTGGTCAGTCACCAGCAACAGCGGCAGGAAGGCTAACCTTGATAACATGTGGCTTGAAACTATGATGGCTTTGATTGGGGAGCAATTTGAGGATGCCGAGGACATATGTGGTGTTGTTGCGAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAA
>Glyma20g21493.1 sequence type=predicted peptide gene model=Glyma20g21493 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLTYFIYVTLLGQSWVQIHTKPSKHNLTRISVAERERQMATSEEVVAAAPEAAALEAGLKHKLERKWTFWCDNQSKPKQGAAWGTSLRKVYTFDTVEEFWCLYDQVFKPSKLQINADFHLFKTGIEPKWEDPECANGGKWSVTSNSGRKANLDNMWLETMMALIGEQFEDAEDICGVVASVRQWQDKLSLWTKTAANEAAQMSIGRKWKEIIDVNDKITYNFHDDSRTKGAPKGRYAV* >Glyma20g21493.2 sequence type=predicted peptide gene model=Glyma20g21493 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLTYFIYVTLLGQSWVQIHTKPSKHNLTRISVAERERQMATSEEVVAAAPEAAALEAGLKHKLERKWTFWCDNQSKPKQGAAWGTSLRKVYTFDTVEEFWCLYDQVFKPSKLQINADFHLFKTGIEPKWEDPECANGGKWSVTSNSGRKANLDNMWLETMMALIGEQFEDAEDICGVVASVRQWQDKLSLWTKTAANEAAQMSIGRKWKEIIDVNDKITYNFHDDSRTKGASKGRYTV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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