Glyma20g21431 - SoyBase

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Report for Sequence Feature Glyma20g21431

Feature Type:	gene_model
Chromosome:	Gm20
Start:	30690661
stop:	30695145
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21431

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04400	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L14p/L23e family protein \| chr3:1167339-1168308 FORWARD LENGTH=140	SoyBase	E_val: 1.00E-69	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0901	KOG	60S ribosomal protein L14/L17/L23	JGI		ISS
PTHR11761	Panther	50S RIBOSOMAL PROTEIN L14-RELATED	JGI		ISS
PF00238	PFAM	Ribosomal protein L14p/L23e	JGI		ISS
UniRef100_B3TLN0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L17 n=13 Tax=Magnoliophyta RepID=B3TLN0_ELAGV	SoyBase	E_val: 9.00E-68	ISS
UniRef100_UPI000233DA02	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DA02 related cluster n=1 Tax=unknown RepID=UPI000233DA02	SoyBase	E_val: 4.00E-74	ISS

Expression Patterns of Glyma20g21431

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g21431 not represented in the dataset	Glyma20g21431 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g21431 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g085400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21431

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g21431

Limit To All Plant Sequences

>Glyma20g21431.1   sequence type=CDS   gene model=Glyma20g21431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAAGCGAGGACGTGGTGGTTCTGCTGGTAACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCTGTGAATCTTTACATCATATCGGTGAAAGGAATCAAGGGTCGCCTCAACAGATTGCCATATGCTTGTGTTGGTGACTTGGTCATGGCTACTGTGAAAAAGGGGAAGCCCAATCTTAGGAAGAAGGTATTGCCAGCAGTTATTGTGAGACAGCGTAACCCGTGGAGAAGAAAGGATGGTGCCTACATGTACTTTGAAGATAATGCAAGTGTTATCGTAAACTCAGGGAGAAATGAAAGGTATGAAATACATTTCTCAAATTGTGTTGATATTTTGCATTTGACATGTTCTGCCTTAACTGGGCCTATTAGCAAGGAGTGTGCTGATCTGTGGCCCAGAATTGCAAGTGCTGCCAATGCCATTGTCTGA

Predicted protein sequences of Glyma20g21431

Limit To All Plant Sequences

>Glyma20g21431.1   sequence type=predicted peptide   gene model=Glyma20g21431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKRGRGGSAGNKFRMSLGLPVAAVNLYIISVKGIKGRLNRLPYACVGDLVMATVKKGKPNLRKKVLPAVIVRQRNPWRRKDGAYMYFEDNASVIVNSGRNERYEIHFSNCVDILHLTCSALTGPISKECADLWPRIASAANAIV*

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