Glyma20g21420 - SoyBase

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Report for Sequence Feature Glyma20g21420

Feature Type:	gene_model
Chromosome:	Gm20
Start:	30685629
stop:	30689204
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33360	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3527) \| chr2:14140901-14142870 FORWARD LENGTH=603	SoyBase	E_val: 2.00E-85	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF12043	PFAM	Domain of unknown function (DUF3527)	JGI		ISS
UniRef100_I1NEN8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NEN8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P93811	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F19P19.4 protein n=1 Tax=Arabidopsis thaliana RepID=P93811_ARATH	SoyBase	E_val: 5.00E-54	ISS

Expression Patterns of Glyma20g21420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g21420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g085300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g21420

Limit To All Plant Sequences

>Glyma20g21420.1   sequence type=CDS   gene model=Glyma20g21420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACATACACAATGTCGGGTTCAAAAAAGGGGTCAAAGGAAAAAGGATTCATTATCTGAAGCATCTCAGTTAAAAAAGTTAGCTAAAGGTGGAATTTCTCACCAGGCCACGTTTGTAAACATTATTCAATCACAAAATAGTAATGTTTTCCCAAAATATTTGTTCTTCCTACTTGTTCATGGACACTACAAGATTCCAAAGCTTATGGCAAGTGCAGATGAGATGTATCTTCGTCACTGCCTCGAATCTGTACACAATAGTGCATTGAAAGCTTCCCAACACAACAAATCTGTGAGCTTAGAAGCCAACAACTTGTGGACTTCAGAAAAAAGCTTGAATACAGATAAATTTATTGGTGAAGCAGAATGTGATTCTAGTGAGTTAGTCTTGGGACATTCTGTAGCTTCCATAACTGAGAATCTAGTTGTAAGTACTAATGCTTCTGATAATTGGACTTTAGGCACAGTAATGGGGACTAAGAGTATGATAAATATATTGAATAGTCCTTTGCTTCAGCAGGTTGGTGTTTCCGAAAGAGATGACAATTTGAACAGCATGAACTTCACTGATGCTAAAAACATGATATGCTATGATTTTATGGACTCTCCAAGTTCGTCATATAAACTAGAAATGGAAAAACCAATGGTGCAAAGTCATAAGTATGGTTCCATTTCTGTGTCTCAAGGAATGCTCCAGTGCACTTGGAAGCAAGGTGTTCCTCATTTTGTTTTTTCTGCAGATGATCAGAAGGAGGTCTATGTAGCCAAATTGAGCAAGGCAGACACAACACATTATGCAGATTTGGACTATGTGTACCTGTTTCATTTGAACAAGGGACGTGAGATTCCTGACCGAGATTTGCAACTTGTTGGTAAGATGAATGTATCAACATGTTACACCCTCTCCCCTGACAATTGTAGAGTAATGGAAACACGGTTTATATTATTCGGTAATGATAAATTTTATGATAAAGAAATGTACACTTCAAGGCATTCTCACATGAAGAACAAGGGCATGGCTAAGAAAGCATCAAGATCTAGTCCATCGCCTATACACAGAACACTCTCAAAGTTCAGTAGATCAAAGGCCATAAGAGAAAGTTGTCCATTGGATAAACAATCATGTGGGCTAGATGGGACTAATTTAATAGAAACTAATGTTCCCACAAATTTTGAGTTGGCTGCTATTTTGGTCAAAGACCATCTTCTCTCTCACAGCTTGGATAAAGTAGGAGGCTGGGGTTTGAAATTTCTCAACAAATCTGGTGTGAATCATACTACATTGCAATCTGAAAGTTGTAACCAAAATACCGGGGATTGCTCAAGTAGCATAAGCATTCTCGTTCCAGCAGGTCTTCATGGTGGACCTAGAACCACTCACGGTGGTCCATCTAGTCTTGTAGATAGATGGAAATCTGGGGGTTGCTGTGACTGTGGTGGTTGGGATGAGGGATGTCCCTTAACAGTACTTCAGAGAAGAACTATCAATGAGGAGATTCTGTCTCATGCAGATACACAAGGAGAGTGCAAGTCGGTTGATTTAGTTACTCAGGGTTCAAGCAATTTCAGCCCCACCTTGAGGATGGTGAATGTTCATGATGGTTTATATTTTATTGATTTTCAACCATCCTTGTCTGCACTACAGTCTTTCTCCATCGCCGTGGCGATTATTCATACACAGAGTCCTACTCTTCGGCCTAATAGTACCTATGAAGCACCGACACCGACACGGACACCGGACACGACACGGACACGGACACGTGGACACCTATAA

Predicted protein sequences of Glyma20g21420

Limit To All Plant Sequences

>Glyma20g21420.1   sequence type=predicted peptide   gene model=Glyma20g21420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHTQCRVQKRGQRKKDSLSEASQLKKLAKGGISHQATFVNIIQSQNSNVFPKYLFFLLVHGHYKIPKLMASADEMYLRHCLESVHNSALKASQHNKSVSLEANNLWTSEKSLNTDKFIGEAECDSSELVLGHSVASITENLVVSTNASDNWTLGTVMGTKSMINILNSPLLQQVGVSERDDNLNSMNFTDAKNMICYDFMDSPSSSYKLEMEKPMVQSHKYGSISVSQGMLQCTWKQGVPHFVFSADDQKEVYVAKLSKADTTHYADLDYVYLFHLNKGREIPDRDLQLVGKMNVSTCYTLSPDNCRVMETRFILFGNDKFYDKEMYTSRHSHMKNKGMAKKASRSSPSPIHRTLSKFSRSKAIRESCPLDKQSCGLDGTNLIETNVPTNFELAAILVKDHLLSHSLDKVGGWGLKFLNKSGVNHTTLQSESCNQNTGDCSSSISILVPAGLHGGPRTTHGGPSSLVDRWKSGGCCDCGGWDEGCPLTVLQRRTINEEILSHADTQGECKSVDLVTQGSSNFSPTLRMVNVHDGLYFIDFQPSLSALQSFSIAVAIIHTQSPTLRPNSTYEAPTPTRTPDTTRTRTRGHL*

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