Glyma20g21376 - SoyBase

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Report for Sequence Feature Glyma20g21376

Feature Type:	gene_model
Chromosome:	Gm20
Start:	30637228
stop:	30642293
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21376

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04500	AT	Annotation by Michelle Graham. TAIR10: CCT motif family protein \| chr1:1221757-1224235 REVERSE LENGTH=386	SoyBase	E_val: 2.00E-69	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_B0F827	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger-like protein n=1 Tax=Cucumis sativus RepID=B0F827_CUCSA	SoyBase	E_val: 1.00E-94	ISS
UniRef100_UPI000233DD8F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD8F related cluster n=1 Tax=unknown RepID=UPI000233DD8F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g21376

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g21376 not represented in the dataset	Glyma20g21376 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g21376

Paralog	Evidence	Comments
Glyma10g26990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g21376 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g085100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21376

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g21376

Limit To All Plant Sequences

>Glyma20g21376.1   sequence type=CDS   gene model=Glyma20g21376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGGATGTTGTCCACCCCTCAACACCGGCTGAGCAACTCCCCATTGATGAGATTTCAGGCCCGATTAGTGCTCGAATTTTCGAACTTTGCGACCCCGATTTCTTCCCACACACACTGCAAAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGAGAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATGTAGTAGACAACAATAAGTTCAATATCAATAGCAATAGCAGCAACATAGTCACCACTACCTCATCTAGCACTACCACAACCAGCACCACAACCAACAACAACAACAACGCAACGAACGGCAATAATCTTTCTATCTTCTTTGACACTCAAGATGAAATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCATCTCCATCTTTTGTCGTTCCACCACTTCTCCCAATCTCAACTCAGCAGGATCAGTTTGATTTCCCTTCAGCTCAGCCACAGGTGCAACTATCAACAGCAGCAGGTTCAATTTTGACGGGCCTCTCTCACTACCCTACAGATCCTGTGATTGCACCCCTTATTGGAGCTCCGTTACCATCTGTTTTTGATGATGATTGCATATCTTCCATCCCTTCTTATGTGCCTCTCAACCCTTCATCACCCTCTTGCTCTTATCTCAGTCCTGGCATAGGAGTGTACATGCCACCTCCTGGTTCCCTTAACACTGCCTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTGGGGTCTGAACTGCAGGCACATGAATTGGACTACCAGGGAGAAAATGGTGGAATGTATTGTACAGATTCAATTCAAAGGGTGTTTAACTCCCCAGACCTTCAGGCACTTGGTAATGAGAGTCAGAAACTTGTAGCTGGGGCTGGAAGCTCTGCCACTTTGGCACCAGAAATCTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTCTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAACGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAATTAGAGAGAGGGTTGGAGTAGCGCCTATTGTAGAGAAGATGGTGGAAAATAGACTTAGGTGGTTTGGGCATGTAGAGAGAAGACCGGTAGACTCTGTAGTGAGGAGAGTAGACCAGATGGAGAGAAGACAAACAATTCGAGGCAGAGGAAGACCCAAAAAGACTATAAGAGAGGTTATAAAAAAGGATCTCGAAATTAATGGTTTGGATAGAAGTATGGTACTTGATAGAACATTATGGCGGAAGTTGATCCATGTAGCCGACCCCACCTAG

Predicted protein sequences of Glyma20g21376

Limit To All Plant Sequences

>Glyma20g21376.1   sequence type=predicted peptide   gene model=Glyma20g21376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQDVVHPSTPAEQLPIDEISGPISARIFELCDPDFFPHTLQNSEVTSSSNCCHEEKSSYATTISPPLDVVDNNKFNINSNSSNIVTTTSSSTTTTSTTTNNNNNATNGNNLSIFFDTQDEIDNDISASIDFSSSPSFVVPPLLPISTQQDQFDFPSAQPQVQLSTAAGSILTGLSHYPTDPVIAPLIGAPLPSVFDDDCISSIPSYVPLNPSSPSCSYLSPGIGVYMPPPGSLNTALSADSSGLFGGNILLGSELQAHELDYQGENGGMYCTDSIQRVFNSPDLQALGNESQKLVAGAGSSATLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKIRERVGVAPIVEKMVENRLRWFGHVERRPVDSVVRRVDQMERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKLIHVADPT*

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