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Report for Sequence Feature Glyma20g21361

Feature Type:gene_model
Chromosome:Gm20
Start:30607866
stop:30610932
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g21361
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31780AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr1:11391341-11394610 FORWARD LENGTH=680 SoyBaseE_val: 6.00E-22ISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21506Panther COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 JGI ISS
PF06419PFAM Conserved oligomeric complex COG6 JGI ISS
UniRef100_G7K400UniRef Annotation by Michelle Graham. Most informative UniRef hit: Conserved oligomeric Golgi complex subunit n=1 Tax=Medicago truncatula RepID=G7K400_MEDTR SoyBaseE_val: 8.00E-22ISS
UniRef100_UPI00023372C0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023372C0 related cluster n=1 Tax=unknown RepID=UPI00023372C0 SoyBaseE_val: 2.00E-22ISS

Expression Patterns of Glyma20g21361
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g21361 not represented in the dataset
Glyma20g21361 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g21361 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g085000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g21361
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g21361
>Glyma20g21361.1   sequence type=CDS   gene model=Glyma20g21361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAATGAATGTACCACTATGGGAGAAGAAGATTTGACAATAAATGCACTTAGAAAAGAATATCTGAATGGAAACTTTTTCAAGGCATTATCTCATGTCCAAGAGATTCATGCCAATTGCAAAGTGTTGCTTAGGACACATGATCAGCGTGCTGGTTTAGAGCTGATGGATATGATGGTTGTGTATCAAGAATGA
Predicted protein sequences of Glyma20g21361
>Glyma20g21361.1   sequence type=predicted peptide   gene model=Glyma20g21361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGNECTTMGEEDLTINALRKEYLNGNFFKALSHVQEIHANCKVLLRTHDQRAGLELMDMMVVYQE*






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