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Report for Sequence Feature Glyma20g21330

Feature Type:gene_model
Chromosome:Gm20
Start:30528612
stop:30537544
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g21330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33340AT Annotation by Michelle Graham. TAIR10: MOS4-associated complex 3B | chr2:14126584-14131000 REVERSE LENGTH=525 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
KOG0289 KOG mRNA splicing factor JGI ISS
PTHR13889Panther WD40 REPEAT PROTEIN JGI ISS
PTHR13889:SF9Panther SNRNP - RELATED JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF08606PFAM Prp19/Pso4-like JGI ISS
UniRef100_G7I632UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-processing factor-like protein n=1 Tax=Medicago truncatula RepID=G7I632_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NEN5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEN5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g21330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g21330
ParalogEvidenceComments
Glyma10g26870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g21330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g084500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g21330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g21330
>Glyma20g21330.1   sequence type=CDS   gene model=Glyma20g21330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGAGCCCGTCGTGTCTCGGAACTCCGGTCTCCTCTTCGAGAAGCGTTTGATTGAGCGACACATTTCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGACGACATTGTACCAATCAAGACAGGCAAGATAGTGAAACCCAGACCTGTTCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAAGAGCTGAGTCATGCTTTGTATCAGCATGATGCTGCTTGCCGAGTTATTGCAAGACTAAAAAAGGAACGAGATGAAGCTAGGTCCTTACTTGCACAAGCAGAGAGGCAGTTCCCTGTTTCTGCACCAAATGCCATAACAGCAAATGCCCCCGTCCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACTGATTGCAATGCTGCTCTTTCCCAGCAGAGAAAGAAGCGACAGATTCCTCCAACTTTGGCTCCTGTCGAAGCTCTAGAGGCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCTCTTGATATCCTTTATTCTAAGGACTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGCCCATCAGGACAGATATTATCTACACTCAGTGGTCACTCTAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCATTCCTAACTGCTTCAGCAGATAAGACAGTTCGTCTATGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATTCAGCTGAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTACTTTGTGACTGCTTCACTTGATGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACGTGTTTGACTCAGGTTTATGACACTTCAGGTTCTTCGGAAGGGTACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGATTTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGACGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGTGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGGATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGGGATCAATGGACCGAAATCTTCGGATATTCGGCTTGCCCGGTGAAGATGCTCCTACTGAGTCATAA
Predicted protein sequences of Glyma20g21330
>Glyma20g21330.1   sequence type=predicted peptide   gene model=Glyma20g21330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSAPNAITANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSIISELTDCNAALSQQRKKRQIPPTLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGNYNCRHILKDHSAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYDTSGSSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKNTCVKFGPDSKYIAVGSMDRNLRIFGLPGEDAPTES*






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