Glyma20g21200 - SoyBase

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Report for Sequence Feature Glyma20g21200

Feature Type:	gene_model
Chromosome:	Gm20
Start:	30312726
stop:	30316789
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18860	AT	Annotation by Michelle Graham. TAIR10: Syntaxin/t-SNARE family protein \| chr2:8164358-8165650 FORWARD LENGTH=296	SoyBase	E_val: 8.00E-78	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF09177	PFAM	Syntaxin 6, N-terminal	JGI		ISS
UniRef100_G7JVG6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin family protein n=1 Tax=Medicago truncatula RepID=G7JVG6_MEDTR	SoyBase	E_val: 1.00E-166	ISS
UniRef100_I1NEM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NEM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g21200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g21200

Paralog	Evidence	Comments
Glyma10g26797	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma17g07100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g21200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g083500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g21200

Limit To All Plant Sequences

>Glyma20g21200.2   sequence type=transcript   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGAAAAAAGAGAAACTAGTTGAGCCCGGAAAAACAAAACGTGGAGGATAAAAAAGAGAAGGGTCGCTTAAACGTCTCTCTCTCACTGTGTCTTTGAAGGCTTCTTTCTCTCTCTTCTTCCCTTGCTCTGTGTCGCCGTAACACAAAAAAGGGAAGAGAGAGAAAGAACCACCCACCCAACAGCTTTTGTTCTTAACAAGACAAAGCTTCGCGTGTGTTTGGGTTTCTTTTCATCCTTCCAGCTTGGAAGGATTGAAGTTTCTGTCTTTTTCTGATCTCCGCGTGCGTGGTTTGGTTTTGTTGTTGAAGATGTTGGTAGCTAATAGCTTTGATCTATGGCGAAAGGACGCTTTTTTCTCTGCGGCGGAAGAGGTGCAGGAATCAGCTGATATCTATTTGGATGGTCTGTGCACTACCATGCCCTTTGTTGACTTATTCCTGATTTAGGAGGGAGCTTGAATGGAATCTGCATACAGGGCATGGTTGAGAGAGAAGAGAGAAAGGTCAACTCCTGAGGAATTAAATGAACTATGTAGAGAGCTGCAAACTGCTTTAGGTACCGCAAAATGGCAGTTGGAAGAATTTGATAAAGCCGTCAGGCTAAGCTACCGACCTCACAGTGATGACAATACATCCACTAGGCATAGGCAGTTTATTTCTGCCATTGAAAGCCAAATTACCCAGGTTGAAGCAGCACTGAGGGAATCTTACATTGAGGAAGGTAAGCAACCACTTCGGTGGGTAAATCTTGATGAAGAAGAGCGAGATGATCTGGCTGCCTTTCTATCTGGAACTTGTCAGACCACACAAAGCACTAACGATGAATACATGGAGGTGAAACAAGCCAAGAAAGAAGATAAGATTGTAGATATATACACTTTCCGCAACCGGGATATATCTGCTAGTGAAAAGTCTTCTAAGGATGTCATTTCTGTTAACAAGGATACAGATTATCTGATAGAAATAAAAGCAGATGCTGTTTCTAGAAGTAATGATGATTTAGTTTCTCAAACAGATAGAACAACTAGTACAAGGAAGACATGGAGTCCGCCTAATTATGGTGCTTTAAAAATTGTAATTGCTGATGAAGGTGAGCAGAGAGATAAACCCACACGGACTGTTGATGCCACCCCTAAAGAAAAAGGGTTCAGAAATCTATTTTGGAAACAAAAGTTTGAAGATTATCCTCAGGCCACGCGAATAGTTCGTATGTTCAATCAGCGTTTTGGGGGCATTGGTATATGCCAGAGCCAGAGGCAGTTTCAAAGTCCCTTGCACTTGCGATATGGCTGTTCTGTTCAAGTTACACTTGCTCTAATGTTGACCATTTTTCTCATTGTTCCCTTTGTACTTTATTCAACTTGAGTTAAACAGCTGCTTCGATCAATCTGTTCGAGAGGGCTTTAATTGGTCATATGAGATCTCAGCCACTGCCTTCAAGTATTGGTGGGACAAGTTAGCTAAAGGGACAATGAGTGCCAACTTCTATTTTGTCGTTGTTGAGTTACCTATGTGAGTGTGGATACTGATAGGATAACCAACCTCTTCGTCCTACAGGAACACCTGTCTATTTTAGTTTCATAGGGCTGTTAAATGTATATACATTCATCCAATATTTAATGCAAGTTCCGCTTTATTTGGTTGCAACACTATCTCTGAGTGTTACCTTCAATTGAAAGTTAAATATGACAGGGTGGAGTGTCCTATCTATCATGAACAAACACATTTAGTAATGGGTAAATGGTGCCTTTTTTTTTTGTTTCTAACTTCTGAAGGAAC

>Glyma20g21200.3   sequence type=transcript   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTCTTTGAAGGCTTCTTTCTCTCTCTTCTTCCCTTGCTCTGTGTCGCCGTAACACAAAAAAGGGAAGAGAGAGAAAGAACCACCCACCCAACAGCTTTTGTTCTTAACAAGACAAAGCTTCGCGTGTGTTTGGGTTTCTTTTCATCCTTCCAGCTTGGAAGGATTGAAGTTTCTGTCTTTTTCTGATCTCCGCGTGCGTGGTTTGGTTTTGTTGTTGAAGATGTTGGTAGCTAATAGCTTTGATCTATGGCGAAAGGACGCTTTTTTCTCTGCGGCGGAAGAGGTGCAGGAATCAGCTGATATGTACGTTCCCCGATTCGTCTCTTTGATTCACGGTTCCTGTTTTGGACCCCTTTCAGTTGTTTTTCATTGGCTTAATTTAATCACAAGATTAGAATGGAATCTGCATACAGGGCATGGTTGAGAGAGAAGAGAGAAAGGTCAACTCCTGAGGAATTAAATGAACTATGTAGAGAGCTGCAAACTGCTTTAGGTACCGCAAAATGGCAGTTGGAAGAATTTGATAAAGCCGTCAGGCTAAGCTACCGACCTCACAGTGATGACAATACATCCACTAGGCATAGGCAGTTTATTTCTGCCATTGAAAGCCAAATTACCCAGGTTGAAGCAGCACTGAGGGAATCTTACATTGAGGAAGGTAAGCAACCACTTCGGTGGGTAAATCTTGATGAAGAAGAGCGAGATGATCTGGCTGCCTTTCTATCTGGAACTTGTCAGACCACACAAAGCACTAACGATGAATACATGGAGGTGAAACAAGCCAAGAAAGAAGATAAGATTGTAGATATATACACTTTCCGCAACCGGGATATATCTGCTAGTGAAAAGTCTTCTAAGGATGTCATTTCTGTTAACAAGGATACAGATTATCTGATAGAAATAAAAGCAGATGCTGTTTCTAGAAGTAATGATGATTTAGTTTCTCAAACAGATAGAACAACTAGTACAAGGAAGACATGGAGTCCGCCTAATTATGGTGCTTTAAAAATTGTAATTGCTGATGAAGGTGAGCAGAGAGATAAACCCACACGGACTGTTGATGCCACCCCTAAAGAAAAAGGGTTCAGAAATCTATTTTGGAAACAAAAGTTTGAAGATTATCCTCAGGCCACGCGAATAGTTCGTATGTTCAATCAGCGTTTTGGGGGCATTGGTATATGCCAGAGCCAGAGGCAGTTTCAAAGTCCCTTGCACTTGCGATATGGCTGTTCTGTTCAAGTTACACTTGCTCTAATGTTGACCATTTTTCTCATTGTTCCCTTTGTACTTTATTCAACTTGAGTTAAACAGCTGCTTCGATCAATCTGTTCGAGAGGGCTTTAATTGGTCATATGAGATCTCAGCCACTGCCTTCAAGTATTGGTGGGACAAGTTAGCTAAAGGGACAATGAGTGCCAACTTCTATTTTGTCGTTGTTGAGTTACCTATGTGAGTGTGGATACTGATAGGATAACCAACCTCTTCGTCCTACAGGAACACCTGTCTATTTTAGTTTCATAGGGCTGTTAAATGTATATACATTCATCCAATATTTAATGCAAGTTCCGCTTTATTTGGTTGCAACACTATCTCTGAGTGTTACCTTCAATTGAAAGTTAAATATGACAGGGTGGAGTGTCCTATCTATCATG

Coding sequences of Glyma20g21200

Limit To All Plant Sequences

>Glyma20g21200.1   sequence type=CDS   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGTAGCTAATAGCTTTGATCTATGGCGAAAGGACGCTTTTTTCTCTGCGGCGGAAGAGGTGCAGGAATCAGCTGATATAATGGAATCTGCATACAGGGCATGGTTGAGAGAGAAGAGAGAAAGGTCAACTCCTGAGGAATTAAATGAACTATGTAGAGAGCTGCAAACTGCTTTAGGTACCGCAAAATGGCAGTTGGAAGAATTTGATAAAGCCGTCAGGCTAAGCTACCGACCTCACAGTGATGACAATACATCCACTAGGCATAGGCAGTTTATTTCTGCCATTGAAAGCCAAATTACCCAGGTTGAAGCAGCACTGAGGGAATCTTACATTGAGGAAGGTAAGCAACCACTTCGGTGGGTAAATCTTGATGAAGAAGAGCGAGATGATCTGGCTGCCTTTCTATCTGGAACTTGTCAGACCACACAAAGCACTAACGATGAATACATGGAGGTGAAACAAGCCAAGAAAGAAGATAAGATTGTAGATATATACACTTTCCGCAACCGGGATATATCTGCTAGTGAAAAGTCTTCTAAGGATGTCATTTCTGTTAACAAGGATACAGATTATCTGATAGAAATAAAAGCAGATGCTGTTTCTAGAAGTAATGATGATTTAGTTTCTCAAACAGATAGAACAACTAGTACAAGGAAGACATGGAGTCCGCCTAATTATGGTGCTTTAAAAATTGTAATTGCTGATGAAGGTGAGCAGAGAGATAAACCCACACGGACTGTTGATGCCACCCCTAAAGAAAAAGGGTTCAGAAATCTATTTTGGAAACAAAAGTTTGAAGATTATCCTCAGGCCACGCGAATAGTTCGTATGTTCAATCAGCGTTTTGGGGGCATTGGTATATGCCAGAGCCAGAGGCAGTTTCAAAGTCCCTTGCACTTGCGATATGGCTGTTCTGTTCAAGTTACACTTGCTCTAATGTTGACCATTTTTCTCATTGTTCCCTTTGTACTTTATTCAACTTGA

>Glyma20g21200.2   sequence type=CDS   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGCATACAGGGCATGGTTGAGAGAGAAGAGAGAAAGGTCAACTCCTGAGGAATTAAATGAACTATGTAGAGAGCTGCAAACTGCTTTAGGTACCGCAAAATGGCAGTTGGAAGAATTTGATAAAGCCGTCAGGCTAAGCTACCGACCTCACAGTGATGACAATACATCCACTAGGCATAGGCAGTTTATTTCTGCCATTGAAAGCCAAATTACCCAGGTTGAAGCAGCACTGAGGGAATCTTACATTGAGGAAGGTAAGCAACCACTTCGGTGGGTAAATCTTGATGAAGAAGAGCGAGATGATCTGGCTGCCTTTCTATCTGGAACTTGTCAGACCACACAAAGCACTAACGATGAATACATGGAGGTGAAACAAGCCAAGAAAGAAGATAAGATTGTAGATATATACACTTTCCGCAACCGGGATATATCTGCTAGTGAAAAGTCTTCTAAGGATGTCATTTCTGTTAACAAGGATACAGATTATCTGATAGAAATAAAAGCAGATGCTGTTTCTAGAAGTAATGATGATTTAGTTTCTCAAACAGATAGAACAACTAGTACAAGGAAGACATGGAGTCCGCCTAATTATGGTGCTTTAAAAATTGTAATTGCTGATGAAGGTGAGCAGAGAGATAAACCCACACGGACTGTTGATGCCACCCCTAAAGAAAAAGGGTTCAGAAATCTATTTTGGAAACAAAAGTTTGAAGATTATCCTCAGGCCACGCGAATAGTTCGTATGTTCAATCAGCGTTTTGGGGGCATTGGTATATGCCAGAGCCAGAGGCAGTTTCAAAGTCCCTTGCACTTGCGATATGGCTGTTCTGTTCAAGTTACACTTGCTCTAATGTTGACCATTTTTCTCATTGTTCCCTTTGTACTTTATTCAACTTGA

>Glyma20g21200.3   sequence type=CDS   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGCATACAGGGCATGGTTGAGAGAGAAGAGAGAAAGGTCAACTCCTGAGGAATTAAATGAACTATGTAGAGAGCTGCAAACTGCTTTAGGTACCGCAAAATGGCAGTTGGAAGAATTTGATAAAGCCGTCAGGCTAAGCTACCGACCTCACAGTGATGACAATACATCCACTAGGCATAGGCAGTTTATTTCTGCCATTGAAAGCCAAATTACCCAGGTTGAAGCAGCACTGAGGGAATCTTACATTGAGGAAGGTAAGCAACCACTTCGGTGGGTAAATCTTGATGAAGAAGAGCGAGATGATCTGGCTGCCTTTCTATCTGGAACTTGTCAGACCACACAAAGCACTAACGATGAATACATGGAGGTGAAACAAGCCAAGAAAGAAGATAAGATTGTAGATATATACACTTTCCGCAACCGGGATATATCTGCTAGTGAAAAGTCTTCTAAGGATGTCATTTCTGTTAACAAGGATACAGATTATCTGATAGAAATAAAAGCAGATGCTGTTTCTAGAAGTAATGATGATTTAGTTTCTCAAACAGATAGAACAACTAGTACAAGGAAGACATGGAGTCCGCCTAATTATGGTGCTTTAAAAATTGTAATTGCTGATGAAGGTGAGCAGAGAGATAAACCCACACGGACTGTTGATGCCACCCCTAAAGAAAAAGGGTTCAGAAATCTATTTTGGAAACAAAAGTTTGAAGATTATCCTCAGGCCACGCGAATAGTTCGTATGTTCAATCAGCGTTTTGGGGGCATTGGTATATGCCAGAGCCAGAGGCAGTTTCAAAGTCCCTTGCACTTGCGATATGGCTGTTCTGTTCAAGTTACACTTGCTCTAATGTTGACCATTTTTCTCATTGTTCCCTTTGTACTTTATTCAACTTGA

Predicted protein sequences of Glyma20g21200

Limit To All Plant Sequences

>Glyma20g21200.1   sequence type=predicted peptide   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVANSFDLWRKDAFFSAAEEVQESADIMESAYRAWLREKRERSTPEELNELCRELQTALGTAKWQLEEFDKAVRLSYRPHSDDNTSTRHRQFISAIESQITQVEAALRESYIEEGKQPLRWVNLDEEERDDLAAFLSGTCQTTQSTNDEYMEVKQAKKEDKIVDIYTFRNRDISASEKSSKDVISVNKDTDYLIEIKADAVSRSNDDLVSQTDRTTSTRKTWSPPNYGALKIVIADEGEQRDKPTRTVDATPKEKGFRNLFWKQKFEDYPQATRIVRMFNQRFGGIGICQSQRQFQSPLHLRYGCSVQVTLALMLTIFLIVPFVLYST*

>Glyma20g21200.2   sequence type=predicted peptide   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESAYRAWLREKRERSTPEELNELCRELQTALGTAKWQLEEFDKAVRLSYRPHSDDNTSTRHRQFISAIESQITQVEAALRESYIEEGKQPLRWVNLDEEERDDLAAFLSGTCQTTQSTNDEYMEVKQAKKEDKIVDIYTFRNRDISASEKSSKDVISVNKDTDYLIEIKADAVSRSNDDLVSQTDRTTSTRKTWSPPNYGALKIVIADEGEQRDKPTRTVDATPKEKGFRNLFWKQKFEDYPQATRIVRMFNQRFGGIGICQSQRQFQSPLHLRYGCSVQVTLALMLTIFLIVPFVLYST*

>Glyma20g21200.3   sequence type=predicted peptide   gene model=Glyma20g21200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESAYRAWLREKRERSTPEELNELCRELQTALGTAKWQLEEFDKAVRLSYRPHSDDNTSTRHRQFISAIESQITQVEAALRESYIEEGKQPLRWVNLDEEERDDLAAFLSGTCQTTQSTNDEYMEVKQAKKEDKIVDIYTFRNRDISASEKSSKDVISVNKDTDYLIEIKADAVSRSNDDLVSQTDRTTSTRKTWSPPNYGALKIVIADEGEQRDKPTRTVDATPKEKGFRNLFWKQKFEDYPQATRIVRMFNQRFGGIGICQSQRQFQSPLHLRYGCSVQVTLALMLTIFLIVPFVLYST*

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