Glyma20g21130 - SoyBase

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Report for Sequence Feature Glyma20g21130

Feature Type:	gene_model
Chromosome:	Gm20
Start:	30137415
stop:	30140035
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04520	AT	Annotation by Michelle Graham. TAIR10: plasmodesmata-located protein 2 \| chr1:1231852-1233787 FORWARD LENGTH=307	SoyBase	E_val: 9.00E-136	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0010497	GO-bp	Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport	SoyBase	N/A	ISS
GO:0046739	GO-bp	Annotation by Michelle Graham. GO Biological Process: spread of virus in multicellular host	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF83	Panther	RECEPTOR SERINE/THREONINE PROTEIN KINASE-RELATED	JGI		ISS
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
UniRef100_C6TBR8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TBR8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7I3U3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich repeat secretory protein n=1 Tax=Medicago truncatula RepID=G7I3U3_MEDTR	SoyBase	E_val: 5.00E-146	ISS

Expression Patterns of Glyma20g21130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g21130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g083000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g21130

Limit To All Plant Sequences

>Glyma20g21130.2   sequence type=transcript   gene model=Glyma20g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAACTATACTGCACCTACACGTCTACACTACACTTTTTTAACATTTTTTTCTTTCTTTCTGAAAACTATACTACACTTTTTTTTTTTTCTTTTTAACTTTATACATTGTACTGATTGTAGAGAGAGAGAGATGATAGATGCAAGACGTTTTAGGATATCCAAGGGAAAGTGAATCCCAACTCTCTCGAGAGCCACGAAACCAGAACTTCGAGTGACTCAACCTCAAAAAAGCTAAATCCTTTGATGAAGAAAAAGCAGCAGAAAAAGACCGAAGAATCTACAACAGTTTCTTGATCCCTCTTATAGCCTTTGAGCATTGAAAGGGTTTTCCTCAAATTGCCATGATTTGATTCCTCAACACCCCACACACACGTAGTTAAAATGGGTTTTACTAGGAAACCCATGTTTCCTGTGTTGCTGGTTTTGTTCATCACAAGTCTTCTTGAGCCGCCCCATGTTGCAGAATCTACTTCTTCTGATTACTCCACTTTGGTCTACAAGGGCTGCTCAAAGGAGCCTTTCACAGATCCCAATGGGGTGTACTCTCAGGCACTTTCAGCACTCTTTGGCTCATTGGTTTCACAATCCACCAAAGCCAAGTTCTACAAAACCACTTCTGGCTCTGGCCAGAACACCATAACTGGCCTCTTCCAATGCAGAGGGGATCTCACCAATTCTGATTGCTACAACTGTGTCAGCAGGCTCCCAGTTCTGTGTGACAAACTTTGTGGCAAAACCACTGCTGCCAGAGTCCAACTTCTAGGATGTTATATTCTCTATGAGGTTGCAGGGTTCTCCCAAATCTCAGGTATGCAGATGTTGTACAAGACCTGTGGGGCAACAAATGCTGCTGGGAGGGGGTTTGAAGAGAGGAGGGACACTGCTTTCTCAGTGATGGAAAATGGGGTGGTTAGTGGCCATGGCTTCTACACTACCAGCTACCAGTCCTTGTATGTCATGGGGCAGTGTGAGGGAGATGTTGGTGACTCAGATTGTGGGGAGTGTGTGAAGAATGCTGTGCAGAGAGCTCAGGTTGAATGCGGTAGCTCTATTTCAGGACAAGTGTTTTTGCACAAGTGCTTCATTAGTTATAGCTATTACCCAAATGGGGTTCCTTCTAGATCATCTTCTTCATCATCAGCTTCATACTCTTCATCTTCTTCAGGGCAAAATCCAGGGAAAACAGCTGCTATAATATTAGGAGGTGCAGTTGCGGTGGCTTTTCTGGTTATATTGTTGCTATTTGCAAGGAGTTTGAAGAAGAAACATGATGATTATTGACAGCAGAAAATGAATTCTGAGAAGGCAAAATTATTCTTTGTGATGCATTGTTTTTACAAGATTAGTTGATGGATGAGGGGTGGAAAATGGAAGTTTTGTGGTAAATAGAGTTTTTGCTTGATGCAGAAACAATACTACAGGATGGTTCACTGTAATGATTGTTGTAGCTAGGTAGTTAAGATTTTGTTGTTGGGAAGAGCAATATAATTAGAACCTGAAAGTGAGATTTTTTTTCTGACTAGGGTGTAACTGTAAATTACCCAACAGAATGAATGTTTGTCAAAATTTTGGGTCTTACCCTTTAGCCATGTGGGTTATTTCTCTTTTCCCTATTTTCTATACTGTTATGAGTCCTTTTTTTTAGTTGTTCATTGACTTTATGCTATATAAAAAGTTGCAAGTTGCAGCCCTCCCATGCTCCAAGAGTCCTGTCACTATCTCCCCTCAAATACTTAGATATTAAGGCTTTTATGTATTCATTAGTTCACATAAATTATTTTTGTATTCTTATTTCTGTTTAGTTACATCAAGATTTTATTTGCAAA

Coding sequences of Glyma20g21130

Limit To All Plant Sequences

>Glyma20g21130.1   sequence type=CDS   gene model=Glyma20g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTTACTAGGAAACCCATGTTTCCTGTGTTGCTGGTTTTGTTCATCACAAGTCTTCTTGAGCCGCCCCATGTTGCAGAATCTACTTCTTCTGATTACTCCACTTTGGTCTACAAGGGCTGCTCAAAGGAGCCTTTCACAGATCCCAATGGGGTGTACTCTCAGGCACTTTCAGCACTCTTTGGCTCATTGGTTTCACAATCCACCAAAGCCAAGTTCTACAAAACCACTTCTGGCTCTGGCCAGAACACCATAACTGGCCTCTTCCAATGCAGAGGGGATCTCACCAATTCTGATTGCTACAACTGTGTCAGCAGGCTCCCAGTTCTGTGTGACAAACTTTGTGGCAAAACCACTGCTGCCAGAGTCCAACTTCTAGGATGTTATATTCTCTATGAGGTTGCAGGGTTCTCCCAAATCTCAGGTATGCAGATGTTGTACAAGACCTGTGGGGCAACAAATGCTGCTGGGAGGGGGTTTGAAGAGAGGAGGGACACTGCTTTCTCAGTGATGGAAAATGGGGTGGTTAGTGGCCATGGCTTCTACACTACCAGCTACCAGTCCTTGTATGTCATGGGGCAGTGTGAGGGAGATGTTGGTGACTCAGATTGTGGGGAGTGTGTGAAGAATGCTGTGCAGAGAGCTCAGGTTGAATGCGGTAGCTCTATTTCAGGACAAGTGTTTTTGCACAAGTGCTTCATTAGTTATAGCTATTACCCAAATGGGGTTCCTTCTAGATCATCTTCTTCATCATCAGCTTCATACTCTTCATCTTCTTCAGGGCAAAATCCAGGGAAAACAGCTGCTATAATATTAGGAGGTGCAGTTGCGGTGGCTTTTCTGGTTATATTGTTGCTATTTGCAAGGAGTTTGAAGAAGAAACATGATGGTATGAGTTATGTGCGGCAATAA

>Glyma20g21130.2   sequence type=CDS   gene model=Glyma20g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTTACTAGGAAACCCATGTTTCCTGTGTTGCTGGTTTTGTTCATCACAAGTCTTCTTGAGCCGCCCCATGTTGCAGAATCTACTTCTTCTGATTACTCCACTTTGGTCTACAAGGGCTGCTCAAAGGAGCCTTTCACAGATCCCAATGGGGTGTACTCTCAGGCACTTTCAGCACTCTTTGGCTCATTGGTTTCACAATCCACCAAAGCCAAGTTCTACAAAACCACTTCTGGCTCTGGCCAGAACACCATAACTGGCCTCTTCCAATGCAGAGGGGATCTCACCAATTCTGATTGCTACAACTGTGTCAGCAGGCTCCCAGTTCTGTGTGACAAACTTTGTGGCAAAACCACTGCTGCCAGAGTCCAACTTCTAGGATGTTATATTCTCTATGAGGTTGCAGGGTTCTCCCAAATCTCAGGTATGCAGATGTTGTACAAGACCTGTGGGGCAACAAATGCTGCTGGGAGGGGGTTTGAAGAGAGGAGGGACACTGCTTTCTCAGTGATGGAAAATGGGGTGGTTAGTGGCCATGGCTTCTACACTACCAGCTACCAGTCCTTGTATGTCATGGGGCAGTGTGAGGGAGATGTTGGTGACTCAGATTGTGGGGAGTGTGTGAAGAATGCTGTGCAGAGAGCTCAGGTTGAATGCGGTAGCTCTATTTCAGGACAAGTGTTTTTGCACAAGTGCTTCATTAGTTATAGCTATTACCCAAATGGGGTTCCTTCTAGATCATCTTCTTCATCATCAGCTTCATACTCTTCATCTTCTTCAGGGCAAAATCCAGGGAAAACAGCTGCTATAATATTAGGAGGTGCAGTTGCGGTGGCTTTTCTGGTTATATTGTTGCTATTTGCAAGGAGTTTGAAGAAGAAACATGATGATTATTGA

Predicted protein sequences of Glyma20g21130

Limit To All Plant Sequences

>Glyma20g21130.1   sequence type=predicted peptide   gene model=Glyma20g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFTRKPMFPVLLVLFITSLLEPPHVAESTSSDYSTLVYKGCSKEPFTDPNGVYSQALSALFGSLVSQSTKAKFYKTTSGSGQNTITGLFQCRGDLTNSDCYNCVSRLPVLCDKLCGKTTAARVQLLGCYILYEVAGFSQISGMQMLYKTCGATNAAGRGFEERRDTAFSVMENGVVSGHGFYTTSYQSLYVMGQCEGDVGDSDCGECVKNAVQRAQVECGSSISGQVFLHKCFISYSYYPNGVPSRSSSSSSASYSSSSSGQNPGKTAAIILGGAVAVAFLVILLLFARSLKKKHDGMSYVRQ*

>Glyma20g21130.2   sequence type=predicted peptide   gene model=Glyma20g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFTRKPMFPVLLVLFITSLLEPPHVAESTSSDYSTLVYKGCSKEPFTDPNGVYSQALSALFGSLVSQSTKAKFYKTTSGSGQNTITGLFQCRGDLTNSDCYNCVSRLPVLCDKLCGKTTAARVQLLGCYILYEVAGFSQISGMQMLYKTCGATNAAGRGFEERRDTAFSVMENGVVSGHGFYTTSYQSLYVMGQCEGDVGDSDCGECVKNAVQRAQVECGSSISGQVFLHKCFISYSYYPNGVPSRSSSSSSASYSSSSSGQNPGKTAAIILGGAVAVAFLVILLLFARSLKKKHDDY*

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