Report for Sequence Feature Glyma20g21100
Feature Type: gene_model
Chromosome: Gm20
Start: 30090031
stop: 30098833
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g21100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G60000 AT
Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:22093678-22094540 REVERSE LENGTH=258
SoyBase E_val: 1.00E-93 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0019344 GO-bp
Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
KOG0131
KOG
Splicing factor 3b, subunit 4
JGI ISS
PTHR24012 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24012:SF56 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
UniRef100_C6TJX8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJX8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q41124 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast RNA binding protein n=1 Tax=Phaseolus vulgaris RepID=Q41124_PHAVU
SoyBase E_val: 2.00E-149 ISS
Expression Patterns of Glyma20g21100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma20g21100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g082800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g21100
Transcripts of Glyma20g21100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g21100.2 sequence type=transcript gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT
>Glyma20g21100.3 sequence type=transcript gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGTAAGGATCGATGCCTCTTTCCTTTGTCTAGCATTTGCTTACATGCTATGTTCAATTGGTTTGTTCTGCTCAAACCTTTTGCATGCTGAAATTTGTAAATGAAACTTCTCAGGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT
>Glyma20g21100.4 sequence type=transcript gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT
Coding sequences of Glyma20g21100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g21100.1 sequence type=CDS gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA
>Glyma20g21100.2 sequence type=CDS gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA
>Glyma20g21100.3 sequence type=CDS gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGTAAGGATCGATGCCTCTTTCCTTTGTCTAGCATTTGCTTACATGCTATGTTCAATTGGTTTGTTCTGCTCAAACCTTTTGCATGCTGAAATTTGTAAATGA
>Glyma20g21100.4 sequence type=CDS gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA
Predicted protein sequences of Glyma20g21100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g21100.1 sequence type=predicted peptide gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQGKRA*
>Glyma20g21100.2 sequence type=predicted peptide gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDELEGRAMRVSLAQGKRA*
>Glyma20g21100.3 sequence type=predicted peptide gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKVRIDASFLCLAFAYMLCSIGLFCSNLLHAEICK*
>Glyma20g21100.4 sequence type=predicted peptide gene model=Glyma20g21100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEELEGRAMRVSLAQGKRA*