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Report for Sequence Feature Glyma20g21100

Feature Type:gene_model
Chromosome:Gm20
Start:30090031
stop:30098833
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60000AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:22093678-22094540 REVERSE LENGTH=258 SoyBaseE_val: 1.00E-93ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG0131 KOG Splicing factor 3b, subunit 4 JGI ISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PTHR24012:SF56Panther SUBFAMILY NOT NAMED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_C6TJX8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJX8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q41124UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast RNA binding protein n=1 Tax=Phaseolus vulgaris RepID=Q41124_PHAVU SoyBaseE_val: 2.00E-149ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g082800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g21100.2   sequence type=transcript   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT

>Glyma20g21100.3   sequence type=transcript   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGTAAGGATCGATGCCTCTTTCCTTTGTCTAGCATTTGCTTACATGCTATGTTCAATTGGTTTGTTCTGCTCAAACCTTTTGCATGCTGAAATTTGTAAATGAAACTTCTCAGGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT

>Glyma20g21100.4   sequence type=transcript   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT

>Glyma20g21100.1   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA

>Glyma20g21100.2   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA

>Glyma20g21100.3   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGTAAGGATCGATGCCTCTTTCCTTTGTCTAGCATTTGCTTACATGCTATGTTCAATTGGTTTGTTCTGCTCAAACCTTTTGCATGCTGAAATTTGTAAATGA

>Glyma20g21100.4   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA

>Glyma20g21100.1   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQGKRA*

>Glyma20g21100.2   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDELEGRAMRVSLAQGKRA*

>Glyma20g21100.3   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKVRIDASFLCLAFAYMLCSIGLFCSNLLHAEICK*

>Glyma20g21100.4   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEELEGRAMRVSLAQGKRA*







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