Glyma20g21100 - SoyBase

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Report for Sequence Feature Glyma20g21100

Feature Type:	gene_model
Chromosome:	Gm20
Start:	30090031
stop:	30098833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g21100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60000	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:22093678-22094540 REVERSE LENGTH=258	SoyBase	E_val: 1.00E-93	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0131	KOG	Splicing factor 3b, subunit 4	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF56	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_C6TJX8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJX8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q41124	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast RNA binding protein n=1 Tax=Phaseolus vulgaris RepID=Q41124_PHAVU	SoyBase	E_val: 2.00E-149	ISS

Expression Patterns of Glyma20g21100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g21100 not represented in the dataset	Glyma20g21100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g21100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g082800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g21100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g21100

Limit To All Plant Sequences

>Glyma20g21100.2   sequence type=transcript   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT

>Glyma20g21100.3   sequence type=transcript   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGTAAGGATCGATGCCTCTTTCCTTTGTCTAGCATTTGCTTACATGCTATGTTCAATTGGTTTGTTCTGCTCAAACCTTTTGCATGCTGAAATTTGTAAATGAAACTTCTCAGGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT

>Glyma20g21100.4   sequence type=transcript   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATCACTAGACAGTGGACACAATTATGCCACGCATGCACAAGCACCATAACACCCACAATCCATATTTTCTCTCTCATCATCATATCATGTCTTATACAACTGATGAAGTGATCAACTTGTAATGTAACACTTTTGAGTTGCATTGTTGCATCACCGCAAGTCCACAACATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTTAATAAAAATTTGGGAAGGCTTAGATGTTCAACAATGGTGCCATAGAAATGAGAAGTGGATGCTAGTATACCTACCATGATGCAGTTGATGTACTTTGCTGAGGATTTCCTTTTCATTTCTTGTGGTGTATAAATTATTTATTCCCACTTTCAAAAGATCTGCTGACCAGAATGTTGTATTTTGTGTTTAACATTTTTGCTGATACTAACATTGGCCTATCTATTGCTTCCTTCTTGGCTCACCGAATCATACATTGAATCACATACTCTATTCTATGTAACATTTGCTATGAAATGATCAGCACTCGAAGGTGTAAAGTTTGTACCATTTGCTATGAAATGATCAGCACTCGAAGGTACAAACTTCAAAATACATTTTCTTTTTGCTGCAACTTTATAAATGGGTAACTTGAACGTACTGCAGAATCTATAATGCTAGTATGCTGAAATAATTGTTTATTTGATTCAATATATACCACATTTTAAACAAATTAGTGTACTATTGTGCATGCACAGCTTTTAACATCATGTGGTTACATTTAAATCTCCAGCTATGGACAATGAAATTGTGAATTGTATTGATGTGGAATCTGCAAACCAATGTATCCAAACTCCATGTGATTGCCAGCACAAATATATTTTTTTGTTTAAAGTGATTGCTGTTCTTGGCATGCCAAGAACCATTGCTGCATGTCCTTCCCCATTGGTGCAGCCGGATATT

Coding sequences of Glyma20g21100

Limit To All Plant Sequences

>Glyma20g21100.1   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA

>Glyma20g21100.2   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA

>Glyma20g21100.3   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTTACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGTAAGGATCGATGCCTCTTTCCTTTGTCTAGCATTTGCTTACATGCTATGTTCAATTGGTTTGTTCTGCTCAAACCTTTTGCATGCTGAAATTTGTAAATGA

>Glyma20g21100.4   sequence type=CDS   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA

Predicted protein sequences of Glyma20g21100

Limit To All Plant Sequences

>Glyma20g21100.1   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQGKRA*

>Glyma20g21100.2   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDELEGRAMRVSLAQGKRA*

>Glyma20g21100.3   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKVRIDASFLCLAFAYMLCSIGLFCSNLLHAEICK*

>Glyma20g21100.4   sequence type=predicted peptide   gene model=Glyma20g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEELEGRAMRVSLAQGKRA*

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