SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15920 | AT | Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr4:9030742-9033343 REVERSE LENGTH=241 | SoyBase | E_val: 3.00E-39 | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005887 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0051119 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR10791 | Panther | STROMAL CELL PROTEIN/NODULIN MTN3-RELATED | JGI | ISS | |
| PF03083 | PFAM | MtN3/saliva family | JGI | ISS | |
| UniRef100_Q84WN3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bidirectional sugar transporter SWEET17 n=1 Tax=Arabidopsis thaliana RepID=SWT17_ARATH | SoyBase | E_val: 2.00E-36 | ISS |
| UniRef100_UPI000233DD86 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DD86 related cluster n=1 Tax=unknown RepID=UPI000233DD86 | SoyBase | E_val: 1.00E-81 | ISS |
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Glyma20g21064 not represented in the dataset |
Glyma20g21064 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g082700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g21064.1 sequence type=CDS gene model=Glyma20g21064 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTATCTCTGGTTCGACCCCACTAGAAACTTCCACGCTTATTCTATCATTTGGAAGCGCCAGCACATCATACCTATGTTTTGGAAAATAAAGAAGCACGGATCTACGGAAGATTTCTCAAGCCTTCCTTACATTTGCACATTGCTTAATTGCTCCTTATGGACTTACTATGGAATCATAAAGGCTAGAGAGTACCTCGTGGCTACTGTCGATGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTTCTCATATATGCTCCAAAAGGGATAAGGGGTAGAACTCTCATTTTGGCTGTGATTTTGGATGTGGCAATTTCGGCAGTAGCAGTAGTTACTACTCAATTAGCATTGCAAAGAGAAGCTCATGGTGGTGTTGTTGGTGTTATGGGAGCAGGCTTAAACATTGTTATGTATTTCTCACCTCTCTCTGCCATGAGGATGGCTGATGGAATCCATAAAGATCTTTGTTGCTTTGCGTCTCGGGTATCTCTAAGCCTTATACGAGAACATATACAACATATACAGTAA
>Glyma20g21064.1 sequence type=predicted peptide gene model=Glyma20g21064 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFYLWFDPTRNFHAYSIIWKRQHIIPMFWKIKKHGSTEDFSSLPYICTLLNCSLWTYYGIIKAREYLVATVDGFGIVVETIYVILFLIYAPKGIRGRTLILAVILDVAISAVAVVTTQLALQREAHGGVVGVMGAGLNIVMYFSPLSAMRMADGIHKDLCCFASRVSLSLIREHIQHIQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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