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Report for Sequence Feature Glyma20g21047

Feature Type:gene_model
Chromosome:Gm20
Start:29988846
stop:29989369
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g21047
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28050AT Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr3:10442984-10445216 FORWARD LENGTH=367 SoyBaseE_val: 1.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
UniRef100_B9SZH1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9SZH1_RICCO SoyBaseE_val: 8.00E-19ISS
UniRef100_I1JYX0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYX0_SOYBN SoyBaseE_val: 8.00E-40ISS

Expression Patterns of Glyma20g21047
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g21047 not represented in the dataset
Glyma20g21047 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g21047 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g082600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g21047
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g21047
>Glyma20g21047.1   sequence type=CDS   gene model=Glyma20g21047   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAAGAAGGGCCCTCTTTATGTTGCAATGTTTAAGGCAATTGGAATCATCTTTGCAGTCATCATGGGAATTGGCTTTCTTGGTGGCTCTATCTATCTTGGAAGTGTGCTTGGAGCAGCCATAGCGGTTATTGGTTTTTATGCTGTTATTTGGGGGAAAAGCCAAGAGCAAGCAAAGGAAGAGTGTGAAGTCTATGATGACTCGGAATCATACTCGCCGTTGTCCCTCTTTTGGAGAACAAGAGAATGGAGGAATAAAATCATAGCAATCATTTAA
Predicted protein sequences of Glyma20g21047
>Glyma20g21047.1   sequence type=predicted peptide   gene model=Glyma20g21047   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKKGPLYVAMFKAIGIIFAVIMGIGFLGGSIYLGSVLGAAIAVIGFYAVIWGKSQEQAKEECEVYDDSESYSPLSLFWRTREWRNKIIAII*






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