Report for Sequence Feature Glyma20g20980
Feature Type: gene_model
Chromosome: Gm20
Start: 29823440
stop: 29825078
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g20980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G13480 AT
Annotation by Michelle Graham. TAIR10: myb domain protein 79 | chr4:7836675-7837653 FORWARD LENGTH=261
SoyBase E_val: 5.00E-85 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG0048
KOG
Transcription factor, Myb superfamily
JGI ISS
PTHR10641 Panther
MYB-RELATED
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_G7I6P8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7I6P8_MEDTR
SoyBase E_val: 1.00E-124 ISS
UniRef100_I1NEL9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NEL9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g20980
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g20980
Paralog Evidence Comments
Glyma10g26681 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g20980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g082300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g20980
Coding sequences of Glyma20g20980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g20980.1 sequence type=CDS gene model=Glyma20g20980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATTGGGGGGAAGTTATGGCTGGCCATATGGGTAGAGGTGTCATAGAGGAGCAGGTATGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAGGTTGCTTGTTGAGTATGTCAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTACCTAAGACCTGACCTCAAGAGAGGACAGATAACATCACAAGAAGAAAGCATAATTCTAGAGTTGCATACAAGGTGGGGAAACAGGTGGTCAACAATTGCCAGGAGCTTGCCAGGGAGAACTGACAATGAGATAAAAAATTATTGGAGGACTCATTTCAAGAAAAAGGCAAAACGTCCCTCTGATGCAGTAGAGAAGGCTAGAAATAGACTGCTGAGGAAGCAGCAATTTCACCAGCAACAACAACAGCAGTTGCAGCAGCAGAAGGCACAACAACAACTGCAGTTCAACTTTGACGTGAAAGGCATCATGGCCTTTCTTGAAGACAACAGCCATAAAGCACCTTATATATCTCAATCTAGACTAGTGGTGAACATGCACCAAAACACCACAGAAGAGCAAGGATACTTGTATTCTATGCCCAATGGAAACTGTTCTGCTTCTTCTGCATTAGAGACCTCAGCTGAAGAAGTTTTGTGGGATGGTCTGTGGAACATAGATGATGTTCATGGCAATTTCAGTGTAGCTAGTGCAGCAAGCAAAGTTGGTTTATACAATTTAGTTGCTCCCTTCTGTTAA
Predicted protein sequences of Glyma20g20980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g20980.1 sequence type=predicted peptide gene model=Glyma20g20980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYWGEVMAGHMGRGVIEEQVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITSQEESIILELHTRWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKRPSDAVEKARNRLLRKQQFHQQQQQQLQQQKAQQQLQFNFDVKGIMAFLEDNSHKAPYISQSRLVVNMHQNTTEEQGYLYSMPNGNCSASSALETSAEEVLWDGLWNIDDVHGNFSVASAASKVGLYNLVAPFC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
