Glyma20g20930 - SoyBase

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Report for Sequence Feature Glyma20g20930

Feature Type:	gene_model
Chromosome:	Gm20
Start:	29671654
stop:	29673003
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g20930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04540	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr1:1237256-1239061 FORWARD LENGTH=601	SoyBase	E_val: 3.00E-111	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_F4I5P7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent lipid-binding domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4I5P7_ARATH	SoyBase	E_val: 1.00E-108	ISS
UniRef100_UPI000233DD85	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD85 related cluster n=1 Tax=unknown RepID=UPI000233DD85	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g20930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g20930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g081900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g20930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g20930

Limit To All Plant Sequences

>Glyma20g20930.1   sequence type=CDS   gene model=Glyma20g20930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAACGTTTTAGCATGTTACCAACTCCTAGAACTCAATGTCATATCCGCACAAGACTTAGCTCCGGTGGGTCGTTCCATGCGGACTTATGCAATTGCATGGATTGACCCAGATCGCAAACTCTCCACCCGGGTTGATTCTCAGGGTGGAACCAACCCAACATGGAATGACAAGTTTGTCTTTCGAGTTGATGAAGATTTTTTATACGATGAGGAGTCAGTAATTACAATTGACATCTATGCTCTTCATTGGTTTCGAGACATCCATGTGGGCAGCGCTCAGGTGCTCTCGGGTGACCTTTTCCCACCACCAACACAACCCCAAAAAAATACCTACAAATCCACAGGTATGCAATTTATGGGGCTCCAAGTCCAAAGGCCCTCGGGTCGCCCCAAAGGGATTTTGAACATCGGGGCGGCTATAATTGACAGCTCCATGCGGAGCATGCCTCTCTACACACAGAACTCCCCAGCCGTTGGATACAGTCATGACGATCTCAATAAGCCAAGCCATCAAGCCAAGTCAGAGCTTCGGCGCACAAAGAGTGACTCCAGCTCAATGCTCGGCTCGGAAGCCATAGCTCCTGAGCACCAAGCCAAGGCTAGAAAGGGAAAAGCAAGCTCCCAAATTACCCCTTCCGAAGTAAGCACCAAGAGTAAAAACAAGACCAGCTCCACATTGAGTGACTCAAATGTGAAGGCAACCCCAAAGAGGGGTAAATTGGGTAGAAAGAAGACGAAAATAACATCTCATGACTCACAAAACAACCTCAATGCAAGGCTATATGTTGATTACCAAGTAAAGTCCACGCCAAAGCGAGAGTTTCAAAACACTCCCTCGAGGACTTACAACAATAACAACAATAATTATAAAGGTAACCTGAGAGCCACTCCATTGCATGCATTTGCGGTGACAAACGCGGCATTAGAATATGGCACCCCATATCGGTCAAACTTGGGTCGTCGTCCCTTTATGACGGACTCTGAACTGGGTCCGTCAGCTTCGGAGGTTGCAGCAGTGGTGGCGAGACTACCGATCGAGGAGGGAGAGAATTCTACGGTGGGAGGGTGGAGCTTGGATGATAGTGTGGAGGGGTTGCAACCTAAAGTGGAGAGGTGGCAAACAGAGCTGCCGCCGGTGTATGACGGCAGCGAGAGGTCAAACATGACAACGTCAAGCAAGAAAGGGAAGCATTCACGTAGGCAAACAGATGGTGGAAATGGCTTGTTCTCTTGCTTTAGTGTTATATGTGGTGTTGAGTGCTCTATTGTTTGTGGTGGCGGTGACAACAACAAGAAGAACCGGCGCCGCCGGGTTCAGTCAGTGGACAATGAAAGCTTTCTATAA

Predicted protein sequences of Glyma20g20930

Limit To All Plant Sequences

>Glyma20g20930.1   sequence type=predicted peptide   gene model=Glyma20g20930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNVLACYQLLELNVISAQDLAPVGRSMRTYAIAWIDPDRKLSTRVDSQGGTNPTWNDKFVFRVDEDFLYDEESVITIDIYALHWFRDIHVGSAQVLSGDLFPPPTQPQKNTYKSTGMQFMGLQVQRPSGRPKGILNIGAAIIDSSMRSMPLYTQNSPAVGYSHDDLNKPSHQAKSELRRTKSDSSSMLGSEAIAPEHQAKARKGKASSQITPSEVSTKSKNKTSSTLSDSNVKATPKRGKLGRKKTKITSHDSQNNLNARLYVDYQVKSTPKREFQNTPSRTYNNNNNNYKGNLRATPLHAFAVTNAALEYGTPYRSNLGRRPFMTDSELGPSASEVAAVVARLPIEEGENSTVGGWSLDDSVEGLQPKVERWQTELPPVYDGSERSNMTTSSKKGKHSRRQTDGGNGLFSCFSVICGVECSIVCGGGDNNKKNRRRRVQSVDNESFL*

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