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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G43960 | AT | Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450 | SoyBase | E_val: 2.00E-109 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0116 | KOG | RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains | JGI | ISS | |
| PTHR10693 | Panther | RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED | JGI | ISS | |
| PTHR10693:SF8 | Panther | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF02136 | PFAM | Nuclear transport factor 2 (NTF2) domain | JGI | ISS | |
| UniRef100_G7I6R2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ras GTPase-activating protein-binding protein n=1 Tax=Medicago truncatula RepID=G7I6R2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NEL5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEL5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g20920 not represented in the dataset |
Glyma20g20920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g26640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g081800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g20920.2 sequence type=transcript gene model=Glyma20g20920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAAGGAGCACACATTAATAAGAGCAGAGCATAGTAGCATCTTCATTCATCTCTACAGCACAAAAAAGAAAGAAATCCAACCCGTGAAGAAAGCAAAGCAAATAATAATAATAATAAAAAAACGTTTACCCCCTTTTGTCTGCGCGTGCGTGTGGATCTGGCAAGAAAACAAGGAAGGGAGGGTTCATTGCGGATCTGAATTCGCAGTGTTAGGGCTTTGAAGGGTTTTTCCATTTTCTTCAATGGCCACGCCCTTTCCCATTCCCGTCACCGCAGCTCAGGTTGGAACGTACTTCGTAGGACAGTACTATCAGGTGCTTCAGAGCCAACCCGAGTTCGTGCACCAGTTTTACTCCGATGCTAGCACCATGCTCCGTATCGACGGCAACGCCAGAGAAACTGCAGCGGCAATGCTTCAAATCCATGCACTGATTATGTCACTCAGTTACGCTAGAATTGAAATCAAGACTGCACAGTCTCTAGAATCTTGGAGTGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTGCAAGTTAAGGACTACAGCCGGAGGAGGAAATTTATGCAGACATTCTTCCTTGCTCCCCAAGAGAAAGGCTTTTTTGTGCTCAATGATATTTTTCACTTTGTTGAAGAGGATCCAGTTCACCAACAACAACCAGTCTTGTTACCTCAGAGCAATCTTGATTCAAAATTGAATGCTTCAAGTGCAACCAATAAACCTGTGTCCAACTACCTGCTGGGTGGAGATATCCAAGCTAGGGACTACGTTGCTACAAATGAGGTCAAAGAAAATGGTGTAGTTGATAATTATGGATTTTCAGAGCAAAGAATGCAGCGGGCCCCTGATACTGAGCATATTAGGGAGGATAATACTGTTGAAGAGTCAAATGGTTCACTTCAATCTTCAGTGAATGCAGTGCAAGACCATGTACCTGTTTCTCCTGATGAACCTGCTGGGGAGCCACAAAAGCACACTTATGCTTCCATTTTACGGGTTGCTAAAGGACTATCTACGCCAGTAGCGTCTCAGCCTTCTCATAAGAATGTGTCCCCTTCAGAATGGGATCATGCTCCACATAGTAGTAGTCAGCAACAGCAAACGATTGCTTCTGCAAATGCATTTGAAAGGTCTGAAACGGATGCAGTGGAGGAGTTTCCTGCAACAGAAGATGAAGATGAAATCAAGTCTGTTTATGTGAGAAACTTGTCACCTGCAGTGTCTCCTTCTGAAATTGAAGACGAATTCAAGAATTTTGGTAGAATCAGGCCTGATGGTGTTGTTGTTAGAAGTCGCAAGGATGTCGGTGTTTGTTATGCATTTGTTGAATTTGAAGATATGACTGGCGTTCATAATGCAGTCAAGGCAGGATCTGTTCAAATAGCAGGAAGACAAGTATACATTGAAGAACGAAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCACCAAGAGGGCGTTTCAATTCAAGGAACTTTGGCAGGGGAAATGGCCAAGATGGCGGTGATAGGGATTATAACAAATCGAAAGGAAATGGTTTCTATCGACCAAGTCCCCACCAAGAGAGGGGACATTCAGGGCATCATCAAGTACCGAGAAATGGGCAGAATCTTGCTGAGTCCTGAGTCAACAAAAAACATAAGCCAGAGAATCCAATTTTGGGTCCAGATATTTCAACTCTAAATAGTCAACTTCAGTAGATTAGACCAAATATTGATATTTTTCATGTCCTAAATTAAGTTGTTCAGGGAATATGGATGGGATGTTTTCGTTCTTGATAAATTTTATTCAACGGGCTTCTTGTTTCATTTGTTTACATGAATTTAATGTTTAGCCGAAAATGTGTTTAAAACACTTGACATTTATTTATTCCCAATTGAAATTTAAAATCTAGTTGTTTAGCTAATGGTTCTTTGAAATTAGTCGCTTTAACGGTATTGGTGGATC
>Glyma20g20920.1 sequence type=CDS gene model=Glyma20g20920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACGCCCTTTCCCATTCCCGTCACCGCAGCTCAGGTTGGAACGTACTTCGTAGGACAGTACTATCAGGTGCTTCAGAGCCAACCCGAGTTCGTGCACCAGTTTTACTCCGATGCTAGCACCATGCTCCGTATCGACGGCAACGCCAGAGAAACTGCAGCGGCAATGCTTCAAATCCATGCACTGATTATGTCACTCAGTTACGCTAGAATTGAAATCAAGACTGCACAGTCTCTAGAATCTTGGAGTGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTGCAAGTTAAGGACTACAGCCGGAGGAGGAAATTTATGCAGACATTCTTCCTTGCTCCCCAAGAGAAAGGCTTTTTTGTGCTCAATGATATTTTTCACTTTGTTGAAGAGGATCCAGTTCACCAACAACAACCAGTCTTGTTACCTCAGAGCAATCTTGATTCAAAATTGAATGCTTCAAGTGCAACCAATAAACCTGTGTCCAACTACCTGCTGGGTGGAGATATCCAAGCTAGGGACTACGTTGCTACAAATGAGGTCAAAGAAAATGGTGTAGTTGATAATTATGGATTTTCAGAGCAAAGAATGCAGCGGGCCCCTGATACTGAGCATATTAGGGAGGATAATACTGTTGAAGAGTCAAATGGTTCACTTCAATCTTCAGTGAATGCAGTGCAAGACCATGTACCTGTTTCTCCTGATGAACCTGCTGGGGAGCCACAAAAGCACACTTATGCTTCCATTTTACGGGTTGCTAAAGGACTATCTACGCCAGTAGCGTCTCAGCCTTCTCATAAGAATGTGTCCCCTTCAGAATGGGATCATGCTCCACATAGTAGTAGTCAGCAACAGCAAACGATTGCTTCTGCAAATGCATTTGAAAGGTCTGAAACGGATGCAGTGGAGGAGTTTCCTGCAACAGAAGATGAAGGTTACTATGAAATCAAGTCTGTTTATGTGAGAAACTTGTCACCTGCAGTGTCTCCTTCTGAAATTGAAGACGAATTCAAGAATTTTGGTAGAATCAGGCCTGATGGTGTTGTTGTTAGAAGTCGCAAGGATGTCGGTGTTTGTTATGCATTTGTTGAATTTGAAGATATGACTGGCGTTCATAATGCAGTCAAGGCAGGATCTGTTCAAATAGCAGGAAGACAAGTATACATTGAAGAACGAAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCACCAAGAGGGCGTTTCAATTCAAGGAACTTTGGCAGGGGAAATGGCCAAGATGGCGGTGATAGGGATTATAACAAATCGAAAGGAAATGGTTTCTATCGACCAAGTCCCCACCAAGAGAGGGGACATTCAGGGCATCATCAAGTACCGAGAAATGGGCAGAATCTTGCTGAGTCCTGA >Glyma20g20920.2 sequence type=CDS gene model=Glyma20g20920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACGCCCTTTCCCATTCCCGTCACCGCAGCTCAGGTTGGAACGTACTTCGTAGGACAGTACTATCAGGTGCTTCAGAGCCAACCCGAGTTCGTGCACCAGTTTTACTCCGATGCTAGCACCATGCTCCGTATCGACGGCAACGCCAGAGAAACTGCAGCGGCAATGCTTCAAATCCATGCACTGATTATGTCACTCAGTTACGCTAGAATTGAAATCAAGACTGCACAGTCTCTAGAATCTTGGAGTGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTGCAAGTTAAGGACTACAGCCGGAGGAGGAAATTTATGCAGACATTCTTCCTTGCTCCCCAAGAGAAAGGCTTTTTTGTGCTCAATGATATTTTTCACTTTGTTGAAGAGGATCCAGTTCACCAACAACAACCAGTCTTGTTACCTCAGAGCAATCTTGATTCAAAATTGAATGCTTCAAGTGCAACCAATAAACCTGTGTCCAACTACCTGCTGGGTGGAGATATCCAAGCTAGGGACTACGTTGCTACAAATGAGGTCAAAGAAAATGGTGTAGTTGATAATTATGGATTTTCAGAGCAAAGAATGCAGCGGGCCCCTGATACTGAGCATATTAGGGAGGATAATACTGTTGAAGAGTCAAATGGTTCACTTCAATCTTCAGTGAATGCAGTGCAAGACCATGTACCTGTTTCTCCTGATGAACCTGCTGGGGAGCCACAAAAGCACACTTATGCTTCCATTTTACGGGTTGCTAAAGGACTATCTACGCCAGTAGCGTCTCAGCCTTCTCATAAGAATGTGTCCCCTTCAGAATGGGATCATGCTCCACATAGTAGTAGTCAGCAACAGCAAACGATTGCTTCTGCAAATGCATTTGAAAGGTCTGAAACGGATGCAGTGGAGGAGTTTCCTGCAACAGAAGATGAAGATGAAATCAAGTCTGTTTATGTGAGAAACTTGTCACCTGCAGTGTCTCCTTCTGAAATTGAAGACGAATTCAAGAATTTTGGTAGAATCAGGCCTGATGGTGTTGTTGTTAGAAGTCGCAAGGATGTCGGTGTTTGTTATGCATTTGTTGAATTTGAAGATATGACTGGCGTTCATAATGCAGTCAAGGCAGGATCTGTTCAAATAGCAGGAAGACAAGTATACATTGAAGAACGAAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCACCAAGAGGGCGTTTCAATTCAAGGAACTTTGGCAGGGGAAATGGCCAAGATGGCGGTGATAGGGATTATAACAAATCGAAAGGAAATGGTTTCTATCGACCAAGTCCCCACCAAGAGAGGGGACATTCAGGGCATCATCAAGTACCGAGAAATGGGCAGAATCTTGCTGAGTCCTGA
>Glyma20g20920.1 sequence type=predicted peptide gene model=Glyma20g20920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPFPIPVTAAQVGTYFVGQYYQVLQSQPEFVHQFYSDASTMLRIDGNARETAAAMLQIHALIMSLSYARIEIKTAQSLESWSGGVLVMVSGSVQVKDYSRRRKFMQTFFLAPQEKGFFVLNDIFHFVEEDPVHQQQPVLLPQSNLDSKLNASSATNKPVSNYLLGGDIQARDYVATNEVKENGVVDNYGFSEQRMQRAPDTEHIREDNTVEESNGSLQSSVNAVQDHVPVSPDEPAGEPQKHTYASILRVAKGLSTPVASQPSHKNVSPSEWDHAPHSSSQQQQTIASANAFERSETDAVEEFPATEDEGYYEIKSVYVRNLSPAVSPSEIEDEFKNFGRIRPDGVVVRSRKDVGVCYAFVEFEDMTGVHNAVKAGSVQIAGRQVYIEERRPNSNIPSRGGRRGRGRGSYQSDAPRGRFNSRNFGRGNGQDGGDRDYNKSKGNGFYRPSPHQERGHSGHHQVPRNGQNLAES* >Glyma20g20920.2 sequence type=predicted peptide gene model=Glyma20g20920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPFPIPVTAAQVGTYFVGQYYQVLQSQPEFVHQFYSDASTMLRIDGNARETAAAMLQIHALIMSLSYARIEIKTAQSLESWSGGVLVMVSGSVQVKDYSRRRKFMQTFFLAPQEKGFFVLNDIFHFVEEDPVHQQQPVLLPQSNLDSKLNASSATNKPVSNYLLGGDIQARDYVATNEVKENGVVDNYGFSEQRMQRAPDTEHIREDNTVEESNGSLQSSVNAVQDHVPVSPDEPAGEPQKHTYASILRVAKGLSTPVASQPSHKNVSPSEWDHAPHSSSQQQQTIASANAFERSETDAVEEFPATEDEDEIKSVYVRNLSPAVSPSEIEDEFKNFGRIRPDGVVVRSRKDVGVCYAFVEFEDMTGVHNAVKAGSVQIAGRQVYIEERRPNSNIPSRGGRRGRGRGSYQSDAPRGRFNSRNFGRGNGQDGGDRDYNKSKGNGFYRPSPHQERGHSGHHQVPRNGQNLAES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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