Glyma20g20890 - SoyBase

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Report for Sequence Feature Glyma20g20890

Feature Type:	gene_model
Chromosome:	Gm20
Start:	29604690
stop:	29625597
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g20890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13550	AT	Annotation by Michelle Graham. TAIR10: triglyceride lipases;triglyceride lipases \| chr4:7871251-7876160 REVERSE LENGTH=715	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
KOG4569	KOG	Predicted lipase	JGI		ISS
PTHR10774	Panther	CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED)	JGI		ISS
PTHR10774:SF22	Panther	LIPASE CLASS 3 FAMILY PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_B9RWS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Triacylglycerol lipase, putative n=1 Tax=Ricinus communis RepID=B9RWS5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DD83	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD83 related cluster n=1 Tax=unknown RepID=UPI000233DD83	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g20890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g20890

Paralog	Evidence	Comments
Glyma10g26471	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g20890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g081500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g20890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g20890

Limit To All Plant Sequences

>Glyma20g20890.2   sequence type=CDS   gene model=Glyma20g20890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCTTCAATTCCGTTACGTTCTCTCTCCTCTTTCGCCCTCGCTTCCGCTTCCACCAACATTTTCTCGAGCTTTCCCTTTCCCGCCCCGTTTTCCGGGAAAATTGCGCGCTTTCTCTCTCGCGCGGAGGGGGCGAGTTCTTTCAATCTGCTGCGGCTCCTCCAAAACCGGTTCGCAGCTTCAGCGAGTCGCCGTTCCCGAAGACGATGATCGGCCTCCATTCGATATCAATCTCGCGGTGATTCTCGCGGGTTTCGCGTTCGAAGCGTACACTACTCCCCCTGAAAACATGGGCAGGCGTGAAGTTGATGCTGGTGGTTGCAAGACAGTTTACCTTTCTGAGGAATTTGTTCATGAAATTTATGATGGTCAACTCTTCATAAAGTTGAAAAAGGGGTTCGATTTTCCTGCCATGGATCCATGGGGAACAAGTGATCCATACGTGGTCATACAAATGGATTCTCAGACTGCTAAAAGTAATATCAAATGGGGGACAAAGGAGCCAACATGGAATGAGGAGTTTACTTTTAATATTAAGCAGCCTCCAAGCCAAACTTTACAGATCGCAGCTTGGGATGCAAACCTGGTAACTCCTCACAAACGCATGGGGAATGCAGCTGCTGATCTGGAGTGGCTCTGTGATGGAGATGTTCATGAAATACTGGTCGAGTTGGAAGGAATGGGTGGTGGCGGAAAGGTTCAGCTGGAGGTAAAATATAAAAGCTATGATGAAATTGATGAAGAGAAAAGGTGGTGGAAGATACCTTTTGTTTTAGACTTTCTAAAGATAAAGGGTTTTGATTCTGCATTCAGAAAGGTTATTGGTTCTGATACAGTACAGGCCGGCCAATTTGTGGAATATGCATTTGGGCAGTTAAAGTCTTTTAACAATTCATATCTTCCGAAGGGCCAGCAGTCTGATATTAATAATGATAAGTATGACACTGAAGGTACACGGGAACTGAGTGAATCTGTTTCTATCTTCAATATGCCTTCTAATGAAGCTGGTAGTCAAGAAGCCTCCAGAGAAGATTGCGTTGAACAGAGGAACTCAAATGAATTTCACAAACAGGACAATGATACTGAAAATGGACATGCTTCTGAATCATCATCAAAAGTTAGTGAGGAAGAGCTGTCAAATCAAATTTTTTGGAGGAATTTTGCTAATGTTATTAATTCTAGTATTGCTCGAAAGCTAGGTCTATCTGTTCCTGAGAAATTTAAGTGGGATGGATTGGAGTTTTTAAACAAAATTGGTTCACAATCACAAAATATTGCAGAAAGCATTTATGTTCAATCTGGTCTTGCAATTCCTGGAGGCACAGATGATACAAATGATAAAACAAGCGGCCAACCTGCTATTGCTGCATTTCAGTCTTCAGTTCCAGAGGTCAAAGAAGCAACACAGAATTTGATGAGGCAGACTGAGTCAATTTTAGGAGGTTTAATGCTTTTGACTGCAACAGTTTCCAAAATAAAAGACGAAGGGCTTTCTTCAGAAGAGAGGATAATCAAAGAAGATTCTGCCAATGCTGGAGGCAATGATATACAATATTCTACTAATCAGAAGTTTCCTAGCACACAGAATGGATTAGTGTTGGATGATAAAAAAACTGAGGAGATGAAAGAACTTTTTTCTACTGCTGAAAGTGCCATGGAGGCTTGGGCAATGTTGGCCACTTCACTGGGCCAACCTAGTTTCATTAAGTCTGAATTTGAAAAATTATGTTTCTTAGATAATGCATCCACAGACACACAGGTTGCAATTTGGCGTGATTCTGCGCGAAGAAGGTTAGTGGTTGCTTTTAGGGGAACAGAACAGACTCAATGGAAGGACTTAAGAACTGATCTAATGCTTGTGCCAGCCGGGCTAAATCCTGAAAGGATAGGCGGAGATTTCAAGCAAGAGATTCAAGTTCACAGTGGTTTTCTAAGTGCGTATGATTCAGTAAGGACCAGGATCATTTCTCTAATTCGACTTGCAATTGGTTATGTAGATGATCATTCTGAGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCATTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAGCGGGGAGCAATTTCTATTACTATGTATAACTTCGGTTCTCCCAGGGTTGGTAACAAAAGATTTGCAGAAGTTTACAATGAGAGAGTTAAAGATAGCTGGCGAGTTGTGAATCACAGAGATATTATACCTACGGTTCCCCGATTAATGGGTTATTGTCATGTTGAGCGACCTGTATTTCTTGCTGCAGGGGTTTTAAGACATGCCCTAGAAAGCAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTCGGAGAATCAACACCGGATGTCATAGTCAGTGAATTTTTGAAGGGTGAGAAGGAGCTGATTGAGAAGTTGTTACAAACTGAAATAAATATATTCCGCTCAATCAGAGATGGAAGTGCTCTGATGCAGCATATGGAGGATTTCTATTACATCACGTTACTAGAGAATGTAAGATCAAATTACCACCAAGCTGTCTCAAGGTCCGAACAAGATCAAAACTATAGACTATAA

Predicted protein sequences of Glyma20g20890

Limit To All Plant Sequences

>Glyma20g20890.2   sequence type=predicted peptide   gene model=Glyma20g20890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLQFRYVLSPLSPSLPLPPTFSRAFPFPPRFPGKLRAFSLARRGRVLSICCGSSKTGSQLQRVAVPEDDDRPPFDINLAVILAGFAFEAYTTPPENMGRREVDAGGCKTVYLSEEFVHEIYDGQLFIKLKKGFDFPAMDPWGTSDPYVVIQMDSQTAKSNIKWGTKEPTWNEEFTFNIKQPPSQTLQIAAWDANLVTPHKRMGNAAADLEWLCDGDVHEILVELEGMGGGGKVQLEVKYKSYDEIDEEKRWWKIPFVLDFLKIKGFDSAFRKVIGSDTVQAGQFVEYAFGQLKSFNNSYLPKGQQSDINNDKYDTEGTRELSESVSIFNMPSNEAGSQEASREDCVEQRNSNEFHKQDNDTENGHASESSSKVSEEELSNQIFWRNFANVINSSIARKLGLSVPEKFKWDGLEFLNKIGSQSQNIAESIYVQSGLAIPGGTDDTNDKTSGQPAIAAFQSSVPEVKEATQNLMRQTESILGGLMLLTATVSKIKDEGLSSEERIIKEDSANAGGNDIQYSTNQKFPSTQNGLVLDDKKTEEMKELFSTAESAMEAWAMLATSLGQPSFIKSEFEKLCFLDNASTDTQVAIWRDSARRRLVVAFRGTEQTQWKDLRTDLMLVPAGLNPERIGGDFKQEIQVHSGFLSAYDSVRTRIISLIRLAIGYVDDHSESLHKWHVYVTGHSLGGALATLLALELSSNQLAKRGAISITMYNFGSPRVGNKRFAEVYNERVKDSWRVVNHRDIIPTVPRLMGYCHVERPVFLAAGVLRHALESKDILGDGYEGDVLGESTPDVIVSEFLKGEKELIEKLLQTEINIFRSIRDGSALMQHMEDFYYITLLENVRSNYHQAVSRSEQDQNYRL*

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