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Report for Sequence Feature Glyma20g20880

Feature Type:gene_model
Chromosome:Gm20
Start:29560376
stop:29561486
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g20880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13560AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein (LEA) family protein | chr4:7879764-7880311 REVERSE LENGTH=109 SoyBaseE_val: 8.00E-19ISS
GO:0009567GO-bp Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7I791UniRef Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant protein n=1 Tax=Medicago truncatula RepID=G7I791_MEDTR SoyBaseE_val: 3.00E-28ISS
UniRef100_I1NEL1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEL1_SOYBN SoyBaseE_val: 4.00E-53ISS

Expression Patterns of Glyma20g20880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g20880
ParalogEvidenceComments
Glyma10g26440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g20880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g081400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g20880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g20880
>Glyma20g20880.1   sequence type=CDS   gene model=Glyma20g20880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTGCCCAACAAAACTTCAATGCAGGCCAAACCCAAGGCCAGACTCAGGCTAAGGCAGAACATTTTGTCCAATCCACAAAGGAAACAGCTTCGGCAGCTGCTGACAAGGCTAATGCAGCTTCTAACACAACAGGGCAAACTGTTCAACAAAACAAGGAAGAATCTGCTGGTTTTCTCCAACAGACTGGGGAGCAAGTGAAGAACATGGCTCAAGGTGCTGTGGATAGTGTGAAGCACACACTCGGGATGGACAAGAAGTGA
Predicted protein sequences of Glyma20g20880
>Glyma20g20880.1   sequence type=predicted peptide   gene model=Glyma20g20880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSAQQNFNAGQTQGQTQAKAEHFVQSTKETASAAADKANAASNTTGQTVQQNKEESAGFLQQTGEQVKNMAQGAVDSVKHTLGMDKK*






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