Glyma20g20280 - SoyBase

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Report for Sequence Feature Glyma20g20280

Feature Type:	gene_model
Chromosome:	Gm20
Start:	28763551
stop:	28765742
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g20280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05320	AT	Annotation by Michelle Graham. TAIR10: beta-1,2-N-acetylglucosaminyltransferase II \| chr2:1936016-1937308 FORWARD LENGTH=430	SoyBase	E_val: 0	ISS
GO:0009312	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligosaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005795	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0008455	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
KOG2791	KOG	N-acetylglucosaminyltransferase	JGI		ISS
PTHR12871	Panther	BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II	JGI		ISS
PF05060	PFAM	N-acetylglucosaminyltransferase II (MGAT2)	JGI		ISS
UniRef100_I1NEK2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEK2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q599H9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta 1,2 N-acetylglucosaminyltransferase n=1 Tax=Populus tremula x Populus alba RepID=Q599H9_POPCN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g20280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g20280

Paralog	Evidence	Comments
Glyma10g25781	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g20280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g080200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g20280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g20280

Limit To All Plant Sequences

>Glyma20g20280.2   sequence type=CDS   gene model=Glyma20g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTTCCAAGAAACCCCGGCTTAGGCTTAGAGATGTGGCTCTGTGCCCTGGATTAGATTTGTATCCAACTCTCGCGAAGGATCGTATTGTTGTAGTTTTGTATGTTCACAACCGGCCTCAGTATCTGAAAGTGGTTGTTGAGAGCCTTTCGCAGGTGGTGGGGATTAGTGAGACCTTGCTAATTGTTAGTCATGATGGGTACATTGAGGAGATGAACAAGATCATTGATGGTATCAAGTTTTGCCAAGTTAAACAGATCTATGCTACTTATTCGCCCCATCTGTTTTCTGATAGTTTTCCCGGGGTCTCAGCTAATGACTGCAAGGAGAAAGATGATGCTGGAGAAAAACATTGTGAGGGAAATCCTGATCAGTATGGAAACCACCGCTTGCCAAAGATTGTATCACTGAAGCATCATTGGTGGTGGATGATGAACACGGTATGGAATGGGTTGAGAGAGACAAGGGATCATTCTGGTCATATTCTTTTCATTGAAGAAGACCACTTTATATTTCCCAATGCGTATCGCAATCTACAGGTTCTAATTTCACTGAAGCCTAAAAAGTGTCCTGATTGTTATGCTGCTAATTTAGCACCTTCTGATGTGAACTCAAGAGGCGAAGGTTGGGCAACTTTGATTGCTGAGAGAATGGGGAATGTTGGTTACTCTTTCAATCGAACTGTTTGGAAGAAAATACACAATAAGGCGAGAGAGTTTTGTTTCTTTGATGACTATAATTGGGATATCACAATGTGGGCAACTGTTTATCCTTCATTTGGCAGTCCCGTTTACACGTTACGAGGTCCTAGGACCAGCGCCGTTCATTTTGGGAGATGTGGTTTGCATCAAGGTCAGGAGGAGAATAAGGCTTGCATTGATAATGGCATGGTGAACATTAATGTTGAAGAGCCTGATACAGTTTCTAACATTGAATTAAATTGGGAAGTTCACACCTATAAGAATCAGCCTGGTTATAAAGCAGGGTTTAAAGGTTGGGGAGGTTGGGGGGATAATAGAGATCGTCTCTTATGCTTGAGTTTTGCCAAAATGTACCACTCCACTGGCACAGCGTCTCCATTTCACTGCATGAGAAGGCGCTCATTTGTTATGCTACTGGAGAGTAACATTGTTGCATGCTTCTTTGTATCCTATCAGTGA

Predicted protein sequences of Glyma20g20280

Limit To All Plant Sequences

>Glyma20g20280.2   sequence type=predicted peptide   gene model=Glyma20g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSKKPRLRLRDVALCPGLDLYPTLAKDRIVVVLYVHNRPQYLKVVVESLSQVVGISETLLIVSHDGYIEEMNKIIDGIKFCQVKQIYATYSPHLFSDSFPGVSANDCKEKDDAGEKHCEGNPDQYGNHRLPKIVSLKHHWWWMMNTVWNGLRETRDHSGHILFIEEDHFIFPNAYRNLQVLISLKPKKCPDCYAANLAPSDVNSRGEGWATLIAERMGNVGYSFNRTVWKKIHNKAREFCFFDDYNWDITMWATVYPSFGSPVYTLRGPRTSAVHFGRCGLHQGQEENKACIDNGMVNINVEEPDTVSNIELNWEVHTYKNQPGYKAGFKGWGGWGDNRDRLLCLSFAKMYHSTGTASPFHCMRRRSFVMLLESNIVACFFVSYQ*

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