SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04620 | AT | Annotation by Michelle Graham. TAIR10: coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family | chr1:1282869-1286492 REVERSE LENGTH=462 | SoyBase | E_val: 0 | ISS |
| GO:0015994 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process | SoyBase | N/A | ISS |
| GO:0033354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll cycle | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0050454 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme F420 hydrogenase activity | SoyBase | N/A | ISS |
| GO:0090415 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 7-hydroxymethyl chlorophyll a reductase activity | SoyBase | N/A | ISS |
| PF04422 | PFAM | Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term | JGI | ISS | |
| PF04432 | PFAM | Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus | JGI | ISS | |
| UniRef100_B9RWS1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Coenzyme F420 hydrogenase subunit beta, putative n=1 Tax=Ricinus communis RepID=B9RWS1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NEK0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NEK0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g20070 not represented in the dataset |
Glyma20g20070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g25710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g20070.2 sequence type=transcript gene model=Glyma20g20070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCCTTATTCCTCTATGCCAAGCTCTCCTCTCTATCTATTTCCCTCACCATTCGTTCTTCTTCATCCAAAGACACCTCTTTGAAACAGGACTGGAGGACAAAGTCCAAACCTATCCCACCAGGTGGCACATACCCAGCAAAAGATCATTGCAGTCGTTGTGGGTTGTGTGATACATATTATATTGCCCATGTCAAGAACGCGTGTGCTTTCTTGGGAGATGGAATGTCTAATATTGAAAGATTGGAGCCTGTTGTTCATGGTAGAGGCAGGAAAACTGATAACATGGATGAAACCTACTTAGGGGTATATGAGGAACTGCTATATGCTCGGAAACTTCAACCTGCGGAAGGAGCTCAATGGACTGGGATAGTAACAACCATTGCAATAGAAATGCTTAAATCAGGCATGGTGGAGGCTGTCATTTGTGTACAAAGTGATCCTGATGACAAATTTGCTCCTAGACCTGTTTTAGCAAGGACACCAGAAGAAGTGTTGGCTGCTAAAGGTGTCAAGCCAACATTGTCACCTAACCTCAATACTCTCGCACTTGTTGAGGCTGCAGGTGTCAAGCGTCTTCTTTTCTGTGTTGTAGGTTGCCAGGTGCAAGCATTAAGATCTGTGGAGCACCACCTGAATTTGGATAAGCTCTATGTTTTAGGAACAAATTGTGTGGACAATGGTACTAGGGAAGGGCTGGATAAGTTTCTAAAAGCTGCGAGCCAATCACCAGAAATAGTTCTACATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGTCATATAGAAGAGGTTCCTTATTTTTGTCTGCCAACAAATGATTTGGTTGATGTTATTGCCCCATCTTGTTACAGTTGTTTTGACTATACAAATGCTTTAGTTAAAAATAATTTTCAGGACTTAGTGGTTGGATATATGGGTGTGCCAAAACATTCTGGAATCGGCATGACACAACATCCACAATATGTTACAGTCAGGAATAAACGTGGAAGAGAGATGTTGAGTCTTATAGAGAAATTACTGGAGATTACTCCAACAATTAGTACTGGGAATAGGCGACCATTTGTCATGGAGACTGTTAAGGCTGATGATGAAGCTAAGTTAGGAAGAGGTCCCTCTCAGCCTGCCCCAAAGTTTATTGGAAGTTTGTTGGCTTTTATACTAAACTTGGTTGGTCCAAAGGGTCTTGAATTTGCACGCTATTCACTTGATTATCATACCATTCGCAACTATCTTCATGTGAATCGTATGTGGGGAAAGGAAAGGGCTGATAAGCACATGCCTACATATGCTAAGAAAATTGTGGATTCTTACAACCAAAATGGTCAAATTGAGAAGATGCTTTCTAACAAGTGATTCTAACAGATTAAAAGCTTCCAATCAGTGGCATAGGTGACTTCAAAGTATGCATTGAGTCTATGTCATTGGAAATGATCAGGAGGT
>Glyma20g20070.1 sequence type=CDS gene model=Glyma20g20070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCCTTATTCCTCTATGCCAAGCTCTCCTCTCTATCTATTTCCCTCACCATTCGTTCTTCTTCATCCAAAGACACCTCTTTGAAACAGGACTGGAGGACAAAGTCCAAACCTATCCCACCAGGTGGCACATACCCAGCAAAAGATCATTGCAGTCGTTGTGGGTTGTGTGATACATATTATATTGCCCATGTCAAGAACGCGTGTGCTTTCTTGGGAGATGGAATGTCTAATATTGAAAGATTGGAGCCTGTTGTTCATGGTAGAGGCAGGAAAACTGATAACATGGATGAAACCTACTTAGGGGTATATGAGGAACTGCTATATGCTCGGAAACTTCAACCTGCGGAAGGAGCTCAATGGACTGGGATAGTAACAACCATTGCAATAGAAATGCTTAAATCAGGCATGGTGGAGGCTGTCATTTGTGTACAAAGTGATCCTGATGACAAATTTGCTCCTAGACCTGTTTTAGCAAGGACACCAGAAGAAGTGTTGGCTGCTAAAGGTGTCAAGCCAACATTGTCACCTAACCTCAATACTCTCGCACTTGTTGAGGCTGCAGGTGTCAAGCGTCTTCTTTTCTGTGTTGTAGGTTGCCAGGTGCAAGCATTAAGATCTGTGGAGCACCACCTGAATTTGGATAAGCTCTATGTTTTAGGAACAAATTGTGTGGACAATGGTACTAGGGAAGGGCTGGATAAGTTTCTAAAAGCTGCGAGCCAATCACCAGAAATAGTTCTACATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGTCATATAGAAGAGGTTCCTTATTTTTGTCTGCCAACAAATGATTTGGTTGATGTTATTGCCCCATCTTGTTACAGTTGTTTTGACTATACAAATGCTTTAGTTGACTTAGTGGTTGGATATATGGGTGTGCCAAAACATTCTGGAATCGGCATGACACAACATCCACAATATGTTACAGTCAGGAATAAACGTGGAAGAGAGATGTTGAGTCTTATAGAGAAATTACTGGAGATTACTCCAACAATTAGTACTGGGAATAGGCGACCATTTGTCATGGAGACTGTTAAGGCTGATGATGAAGCTAAGTTAGGAAGAGGTCCCTCTCAGCCTGCCCCAAAGTTTATTGGAAGTTTGTTGGCTTTTATACTAAACTTGGTTGGTCCAAAGGGTCTTGAATTTGCACGCTATTCACTTGATTATCATACCATTCGCAACTATCTTCATGTGAATCGTATGTGGGGAAAGGAAAGGGCTGATAAGCACATGCCTACATATGCTAAGAAAATTGTGGATTCTTACAACCAAAATGGTCAAATTGAGAAGATGCTTTCTAACAAGTGA >Glyma20g20070.2 sequence type=CDS gene model=Glyma20g20070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCCTTATTCCTCTATGCCAAGCTCTCCTCTCTATCTATTTCCCTCACCATTCGTTCTTCTTCATCCAAAGACACCTCTTTGAAACAGGACTGGAGGACAAAGTCCAAACCTATCCCACCAGGTGGCACATACCCAGCAAAAGATCATTGCAGTCGTTGTGGGTTGTGTGATACATATTATATTGCCCATGTCAAGAACGCGTGTGCTTTCTTGGGAGATGGAATGTCTAATATTGAAAGATTGGAGCCTGTTGTTCATGGTAGAGGCAGGAAAACTGATAACATGGATGAAACCTACTTAGGGGTATATGAGGAACTGCTATATGCTCGGAAACTTCAACCTGCGGAAGGAGCTCAATGGACTGGGATAGTAACAACCATTGCAATAGAAATGCTTAAATCAGGCATGGTGGAGGCTGTCATTTGTGTACAAAGTGATCCTGATGACAAATTTGCTCCTAGACCTGTTTTAGCAAGGACACCAGAAGAAGTGTTGGCTGCTAAAGGTGTCAAGCCAACATTGTCACCTAACCTCAATACTCTCGCACTTGTTGAGGCTGCAGGTGTCAAGCGTCTTCTTTTCTGTGTTGTAGGTTGCCAGGTGCAAGCATTAAGATCTGTGGAGCACCACCTGAATTTGGATAAGCTCTATGTTTTAGGAACAAATTGTGTGGACAATGGTACTAGGGAAGGGCTGGATAAGTTTCTAAAAGCTGCGAGCCAATCACCAGAAATAGTTCTACATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGTCATATAGAAGAGGTTCCTTATTTTTGTCTGCCAACAAATGATTTGGTTGATGTTATTGCCCCATCTTGTTACAGTTGTTTTGACTATACAAATGCTTTAGTTAAAAATAATTTTCAGGACTTAGTGGTTGGATATATGGGTGTGCCAAAACATTCTGGAATCGGCATGACACAACATCCACAATATGTTACAGTCAGGAATAAACGTGGAAGAGAGATGTTGAGTCTTATAGAGAAATTACTGGAGATTACTCCAACAATTAGTACTGGGAATAGGCGACCATTTGTCATGGAGACTGTTAAGGCTGATGATGAAGCTAAGTTAGGAAGAGGTCCCTCTCAGCCTGCCCCAAAGTTTATTGGAAGTTTGTTGGCTTTTATACTAAACTTGGTTGGTCCAAAGGGTCTTGAATTTGCACGCTATTCACTTGATTATCATACCATTCGCAACTATCTTCATGTGAATCGTATGTGGGGAAAGGAAAGGGCTGATAAGCACATGCCTACATATGCTAAGAAAATTGTGGATTCTTACAACCAAAATGGTCAAATTGAGAAGATGCTTTCTAACAAGTGA
>Glyma20g20070.1 sequence type=predicted peptide gene model=Glyma20g20070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLFLYAKLSSLSISLTIRSSSSKDTSLKQDWRTKSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKNACAFLGDGMSNIERLEPVVHGRGRKTDNMDETYLGVYEELLYARKLQPAEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPDDKFAPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCVVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLKAASQSPEIVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPTNDLVDVIAPSCYSCFDYTNALVDLVVGYMGVPKHSGIGMTQHPQYVTVRNKRGREMLSLIEKLLEITPTISTGNRRPFVMETVKADDEAKLGRGPSQPAPKFIGSLLAFILNLVGPKGLEFARYSLDYHTIRNYLHVNRMWGKERADKHMPTYAKKIVDSYNQNGQIEKMLSNK* >Glyma20g20070.2 sequence type=predicted peptide gene model=Glyma20g20070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLFLYAKLSSLSISLTIRSSSSKDTSLKQDWRTKSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKNACAFLGDGMSNIERLEPVVHGRGRKTDNMDETYLGVYEELLYARKLQPAEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPDDKFAPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCVVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLKAASQSPEIVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPTNDLVDVIAPSCYSCFDYTNALVKNNFQDLVVGYMGVPKHSGIGMTQHPQYVTVRNKRGREMLSLIEKLLEITPTISTGNRRPFVMETVKADDEAKLGRGPSQPAPKFIGSLLAFILNLVGPKGLEFARYSLDYHTIRNYLHVNRMWGKERADKHMPTYAKKIVDSYNQNGQIEKMLSNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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