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Report for Sequence Feature Glyma20g20053

Feature Type:gene_model
Chromosome:Gm20
Start:28438662
stop:28457888
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g20053
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23980AT Annotation by Michelle Graham. TAIR10: BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714 SoyBaseE_val: 2.00E-150ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010091GO-bp Annotation by Michelle Graham. GO Biological Process: trichome branching SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0048826GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon morphogenesis SoyBaseN/AISS
GO:0051781GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
UniRef100_Q9LIQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein BLISTER n=1 Tax=Arabidopsis thaliana RepID=Q9LIQ9_ARATH SoyBaseE_val: 9.00E-148ISS
UniRef100_UPI000233DD7AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DD7A related cluster n=1 Tax=unknown RepID=UPI000233DD7A SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g20053
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g20053 not represented in the dataset
Glyma20g20053 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g20053
ParalogEvidenceComments
Glyma10g25696 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g20053 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g079600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g20053
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g20053
>Glyma20g20053.1   sequence type=CDS   gene model=Glyma20g20053   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGGCTCAGGTGCTGCCAAACACCGCCGCGTCGTCGCGGAAGCAAGAGCATCTTGAAGCTGGCAAGCGCCGGCTGGAGGAGTTTCGTAAAAAGAAAGCTGCTGAGCGGACCAAGAAGGCTGCTTCCTCTGGCCAAGTTCACAATTCTGATGCTAGCTTGAATAAAAAACAATCTTCTGAAGTTGAAAATGTACGTGTTAACGAGTCAGATGGAGTTAGCACGTCTGATGGTGTTGGGGGATCTGTTACTGGCACATCAACTTTGGGGATGAGGAATGATAAGAACCTGAATTTGATTAGCCAAAGTAGTAATCAAGGGTCTTTGGCTGGTAGTACTTTTCTTGCCAGAAATGATCTTAATATGTTATCTACAAGTCTGGGGGAGGCACATTCCAATATTGATGAATGTAAGAGATATAATGCTTCTTCTGTTACCACATCTGCTGATTTTAGTCAAAACAATGAGACAAATAAGGTGAATGATATACATGGAATTCATGCTGTTGGTGTTGATGGAATTCCATATGCGACAACAAACCACCAAAGCGTTCCTCTACGCTCGCAAGAAAGTCAAGAGTTTGATAGTAATCCTAGTCAATCTAGTCTTCATGGGGTGAATGACAACCAATCAAACAAGAGTAACAGTTCTTTGAAGGATTATGCAGTTACTGATAATTTCTCTTCGTATTTTCCTTCAAAAATCACACCTCAGAACTCTGTTGATACTCCACTGCAAATCAAGCCAATGAATTCTAGCACTTTTGATAGTGGCTACTCACATAGTTTGCTTTCTGGAGGTTTCAGTGATTCTTTTAGTTCCAAGTTTCGAGAGACCATTACTAGCTCTGATAATAATTTGCCTAGTCTTCATGGTGCAACTATGCTAAAATATGATTCCACAGGTTATGAAGCAAGAAATTCTTCTAATCATACACCAATACATTCGTTGCCAACGGAATCTAGTTCTCAGAGGTCACGTCCATCTTTTCTTGATTCTCTTAATGTCACTAGACCTTCTTTGGGGTCTCCATTTCATCAATCTGAGCAAGATTCCTCAATGTCCAATCATTTAGAATCAAGCAGCAATGGCATATCAGGATCTACTTATTTCCATAAGCCGTCTGAAGAGACAAAAAGTGCACTGATGACAAGCACTAGGGAAAATGGCATGGAGAAGCAGCATGATTATTACTCATCTTCACAAAATGAAGACTTTTCTGCTTTAGAACAGCATATCGAAGATCTAACAAAAGAAAAGTTTTCTTTGCGACGCGCTCTTGAGGCTTCTCGAACTTTAGCAGAGTCACTAGCTACTGAAAATTCAACTCTGACTGATAATTATAATCAACAGAGGAGTGTCGTCGACCAATTGAAATCAGACATGGAGAATTTACAAGAAGATATCAAAGCCCGACTGGTTGAGTTTGAGGCTATCAAGAGTGAATATACAAATGCACAACTAGAATGTAATGCAGCTGATGAGCGTGCCAAGTTATTGGCATCTGAAGTTATTGGTTTAGAGGAGAAGGCACTGAGACTAAGATCCAGTGAGCTAAAGCTCGAGAAGCAGTTGGAAAATGCTAAAGAAGAAATTTCTTCATACAGAAAGAAAATGTCTAGCCTAGACAAAGACCGCCATGATTTGCAGTCAACCATCGAGGCTCTTCAAGAGGAAAAGAAGATGTTGCTTTCTAAGCTGCGAAAGGCTTCAGGAATTGGAAAGTCTATTGAGAGTCAAACAAGTAAAAGGGATGTTTCTACATCTACAGACGATTTAGCAAGTGAAGATCCTGCTTCTAACTCTTCCAACCCAGAAATCAATGATAATGCTGCTGAGGCCTCTAGTTTGTCCTCTGTTACTGAAACTAGACACTCATCTTTTGGAGTTTCAACTGTGAATATTCCTCACGATCAGATGAGAATGATTGAGAACATTAATGCACTTATTTCTGAGCTGGCATTGGAGAAAGAAGAATTGATAAAAGCCTTGACATCTGAATCATCTGAGTGTTCCAGGATGAAGGAAATAAACAAGGAGTTGTCCCGAAAGCTTGAGGTCCAGACACAAAGATTAGAGCTTTTGACTGCTCAAAGCATGGTCAATGAAAATGTTTCTGCAAAGCAACCAGATTCTCGTGCTATGTATGAGAACACCCCATATGCAGATGAGGGTGATGAGGTCGTGGAAAGGGTGTTAGGATGGATTATGAAGCTCTTTCCTGGTGGAACTTCAAGACGGAGAACCAGCAAACTTCTTTGA
Predicted protein sequences of Glyma20g20053
>Glyma20g20053.1   sequence type=predicted peptide   gene model=Glyma20g20053   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAQVLPNTAASSRKQEHLEAGKRRLEEFRKKKAAERTKKAASSGQVHNSDASLNKKQSSEVENVRVNESDGVSTSDGVGGSVTGTSTLGMRNDKNLNLISQSSNQGSLAGSTFLARNDLNMLSTSLGEAHSNIDECKRYNASSVTTSADFSQNNETNKVNDIHGIHAVGVDGIPYATTNHQSVPLRSQESQEFDSNPSQSSLHGVNDNQSNKSNSSLKDYAVTDNFSSYFPSKITPQNSVDTPLQIKPMNSSTFDSGYSHSLLSGGFSDSFSSKFRETITSSDNNLPSLHGATMLKYDSTGYEARNSSNHTPIHSLPTESSSQRSRPSFLDSLNVTRPSLGSPFHQSEQDSSMSNHLESSSNGISGSTYFHKPSEETKSALMTSTRENGMEKQHDYYSSSQNEDFSALEQHIEDLTKEKFSLRRALEASRTLAESLATENSTLTDNYNQQRSVVDQLKSDMENLQEDIKARLVEFEAIKSEYTNAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLEKQLENAKEEISSYRKKMSSLDKDRHDLQSTIEALQEEKKMLLSKLRKASGIGKSIESQTSKRDVSTSTDDLASEDPASNSSNPEINDNAAEASSLSSVTETRHSSFGVSTVNIPHDQMRMIENINALISELALEKEELIKALTSESSECSRMKEINKELSRKLEVQTQRLELLTAQSMVNENVSAKQPDSRAMYENTPYADEGDEVVERVLGWIMKLFPGGTSRRRTSKLL*






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