Glyma20g20010 - SoyBase

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Report for Sequence Feature Glyma20g20010

Feature Type:	gene_model
Chromosome:	Gm20
Start:	28403396
stop:	28407193
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g20010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33220	AT	Annotation by Michelle Graham. TAIR10: GRIM-19 protein \| chr2:14078974-14079929 FORWARD LENGTH=143	SoyBase	E_val: 1.00E-60	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0031966	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane	SoyBase	N/A	ISS
GO:0045271	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: respiratory chain complex I	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12966	Panther	NADH-UBIQUINONE OXIDOREDUCTASE B16.6 SUBUNIT	JGI		ISS
PF06212	PFAM	GRIM-19 protein	JGI		ISS
UniRef100_I1NEJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NEJ6_SOYBN	SoyBase	E_val: 5.00E-68	ISS
UniRef100_Q8VXK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F6 protein n=1 Tax=Gossypium hirsutum RepID=Q8VXK6_GOSHI	SoyBase	E_val: 3.00E-59	ISS

Expression Patterns of Glyma20g20010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g20010

Paralog	Evidence	Comments
Glyma10g25670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g20010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g079400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g20010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g20010

Limit To All Plant Sequences

>Glyma20g20010.2   sequence type=transcript   gene model=Glyma20g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATTTTAAACCCGACTAGCGGGCCCCTTCCCCTATGAGAAGCTGTGTGTTCCCCTTTAAGGCTTTAACACATTCATAGAGAGAAGAAACAAAGCGAGAGCATTCCATTGTTGTTATATTGTATTGTAGCCGGAGAAGAAGAGAAGAGATAGCGGCGAAGAAAGAAAGATGACGGAGGCATATATAAGGAAGAAGCCCGGGATGGCGAGCGTGAAGGACATGCCGGTTCTCCAGGACGGTCCACCACCAGGCGGGTTCGCTCCGGTCCGGTTCGCCCGGCGCATCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGAAGTAGCTGTTTAAGGAAGAACCGGATCACATATGTTTGTTTTCAGTTCCCACTCAAAAACTAAAACTGATGTATCATATAGGGCACTGAAGGAAGAAAAGTATGCTGCCCGCCGATCCATACTGCCTGTGCTACAGGCTGAAGAGGATGAGAGATTTGTTAAAGAGTGGCATTAAATATCTCGAGTATGAGGCAGAAGTGATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAGTGTGTATCACTCTGGGAGATGGGTGCCCCCAGCAAGTGGTGAGTTGCGTCCTGATGTATGGTGATGTTATTTCAGCCATCTCTATCTGCTTCTTTCATTACATGCTGCTGGTACTTTTGTCCAGTCTCTAAATTACATGCTGGTACTTTTGTCCAGTCTCTTAAATAAATTTGTATCTGGAACATTTGTAACTGCTTTGTGAAATTTTAAAACAAGAATGCATTTTGAATTTGTACTTCATGTGACAATGGCAATCCAACCTCTGATATATACCATTGTATGAATGCGCATTCTTGGCATTGGAAATTGTACTGTATTTAAGCTCTGATTTCTAGAAGAATAAGGTGGAAACTTAATTGGGGTAAAATTCCAACATTTCTCAGACCCTCTTGACCATTAAGCGATTTGGAAAATCTTTC

Coding sequences of Glyma20g20010

Limit To All Plant Sequences

>Glyma20g20010.1   sequence type=CDS   gene model=Glyma20g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAGGCATATATAAGGAAGAAGCCCGGGATGGCGAGCGTGAAGGACATGCCGGTTCTCCAGGACGGTCCACCACCAGGCGGGTTCGCTCCGGTCCGGTTCGCCCGGCGCATCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGGGCACTGAAGGAAGAAAAGTATGCTGCCCGCCGATCCATACTGCCTGTGCTACAGGCTGAAGAGGATGAGAGATTTGTTAAAGAGTGGCATTAA

>Glyma20g20010.2   sequence type=CDS   gene model=Glyma20g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAGGCATATATAAGGAAGAAGCCCGGGATGGCGAGCGTGAAGGACATGCCGGTTCTCCAGGACGGTCCACCACCAGGCGGGTTCGCTCCGGTCCGGTTCGCCCGGCGCATCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGAAGTAGCTGTTTAAGGAAGAACCGGATCACATATGTTTGTTTTCAGTTCCCACTCAAAAACTAA

Predicted protein sequences of Glyma20g20010

Limit To All Plant Sequences

>Glyma20g20010.1   sequence type=predicted peptide   gene model=Glyma20g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEAYIRKKPGMASVKDMPVLQDGPPPGGFAPVRFARRIPNKGPSAVAIFLTAFGAFSWGMYQVGQGNKIRRALKEEKYAARRSILPVLQAEEDERFVKEWH*

>Glyma20g20010.2   sequence type=predicted peptide   gene model=Glyma20g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEAYIRKKPGMASVKDMPVLQDGPPPGGFAPVRFARRIPNKGPSAVAIFLTAFGAFSWGMYQVGQGNKIRRSSCLRKNRITYVCFQFPLKN*

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