SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g19980

Feature Type:gene_model
Chromosome:Gm20
Start:28287936
stop:28293047
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g19980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23990AT Annotation by Michelle Graham. TAIR10: heat shock protein 60 | chr3:8669013-8672278 FORWARD LENGTH=577 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0007005GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion organization SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042026GO-bp Annotation by Michelle Graham. GO Biological Process: protein refolding SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0044267GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051131GO-bp Annotation by Michelle Graham. GO Biological Process: chaperone-mediated protein complex assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005759GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0356 KOG Mitochondrial chaperonin, Cpn60/Hsp60p JGI ISS
PTHR11353Panther CHAPERONIN JGI ISS
PTHR11353:SF9Panther CHAPERONIN-60KDA, CH60 JGI ISS
PF00118PFAM TCP-1/cpn60 chaperonin family JGI ISS
UniRef100_B9RWQ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chaperonin-60kD, ch60, putative n=1 Tax=Ricinus communis RepID=B9RWQ2_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0000F35DBEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0000F35DBE related cluster n=1 Tax=unknown RepID=UPI0000F35DBE SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g19980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g19980
ParalogEvidenceComments
Glyma10g25630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g19980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g079300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g19980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g19980
>Glyma20g19980.1   sequence type=CDS   gene model=Glyma20g19980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCGCTTGGCTTCTAACCTCGCTTCCAAAGCAAGGATTGCTAGGAGTAGCAGCCAACAGATTGGAAGTAGGCTGAGTTTGAGCAGAAACTATGCGGCTAAAGACATTAAATTTGGTGTGGAGGCTCGGGCTCTGATGCTTAAGGGTGTTGAAGAGCTTGCTGATGCTGTCAAAGTAACCATGGGTCCCAAGGGCCGTAATGTTGTGATTGAGCAAAGTTTTGGTGCCCCTAAAGTAACCAAAGATGGAGTAACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCTAATGCTACTAATGATGTGGCTGGTGATGGAACCACATGTGCTACAGTCCTTACACGAGCAATATTTACTGAAGGCTGCAAATCAATCGCGGCTGGAATGAATGCAATGGACCTGAGGCGGGGTATAAGTATGGCTGTCGATGCTGTGGTCACAAATTTGAAAAGCAGAGCTAGGATGATTAGCACATCTGAAGAAATAGCGCAGGTTGGGATGATATCTGCTAATGGAGAGAGAGAAATTGGTGAGTTGATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGAGTAATCACAATTTCAGATGGCAAAACATTATATAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTCGACAGGGGCTACATATCTCCTTATTTCATTACAAACGATAAGAACCAGAAATGTGAACTTGAAGATCCCCTTATTCTAATTCATGAGAAGAAAATCTCTAGTATAAATGCTATAGTTAAAGTCTTAGAGTTGGCTTTGAAGAGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAGGTGTGTGCTATTAAAGCCCCTGGTTTTGGTGAAAATAGGAAGGCTGGTCTTCAAGATCTTGCAGTTCTCACAGGAGGAGCACTTATTACTGAAGAGCTTGGCTTGAAGCTTGAAAAAGTGGATTTGGATATGCTTGGTACCTGTAAAAAAATAACAGTTTCTAAGGATGACACTGTCATTCTTGATGGAGCGGGTGACAAGAAAGCACTTGAGGAAAGATGCGAGCAGATTAGGTCAGCAATTGAAAACAGTACCTCAGATTATGACAAGGAAAAGTTACAGGAAAGATTAGCCAAGCTTTCTGGTGGTGTTGCAGTGCTTAAGATTGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACTGATGCATTAAATGCAACTAAGGCTGCTGTAGAGGAGGGCATAGTGCCTGGTGGTGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGACACCTGTGCTCACTATTGCATCAAATGCGGGAGTTGAGGGTGCAGTTGTTGTTGGCAAACTATTGGAGCAGGAGAATCATGATCTAGGATATGATGCAGCCAAAGGTGAATATGTTGATATGGTTAAAGCTGGAATCATAGACCCCTTGAAGGTGATTAGGACAGCCTTGGTTGATGCAGCCAGTGTATCGTCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTTCCAAACGATAATAAAGATACTCCAGCTATGGCTGGTGGCATGGGTGGCATGGGTTATTGA
Predicted protein sequences of Glyma20g19980
>Glyma20g19980.1   sequence type=predicted peptide   gene model=Glyma20g19980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRLASNLASKARIARSSSQQIGSRLSLSRNYAAKDIKFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSIAAGMNAMDLRRGISMAVDAVVTNLKSRARMISTSEEIAQVGMISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNDKNQKCELEDPLILIHEKKISSINAIVKVLELALKRQRPLLIIAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGALITEELGLKLEKVDLDMLGTCKKITVSKDDTVILDGAGDKKALEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASRELDKLQTANFGQKIGVQIIQNALKTPVLTIASNAGVEGAVVVGKLLEQENHDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVSELPNDNKDTPAMAGGMGGMGY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo