SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24020 | AT | Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein | chr3:8678827-8679558 FORWARD LENGTH=243 | SoyBase | E_val: 7.00E-105 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21495 | Panther | NUCLEOPORIN-RELATED | JGI | ISS | |
| PTHR21495:SF10 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03018 | PFAM | Dirigent-like protein | JGI | ISS | |
| UniRef100_D7L4A6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance-responsive family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L4A6_ARALL | SoyBase | E_val: 1.00E-103 | ISS |
| UniRef100_I1NEJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEJ2_SOYBN | SoyBase | E_val: 5.00E-175 | ISS |
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Glyma20g19920 not represented in the dataset |
Glyma20g19920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g078800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g19920.1 sequence type=CDS gene model=Glyma20g19920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTTGGGATCATCGGCTACTGTTTTCGGTGTTGCAATGTTGCTTGCCTTTGCACTTATGACAATGCCAATGTGCATGGCAGACACAGAACCCATAAATATAGTTGAGTTGTACATGCATGACATTCTTGGTGGCAGTAACCCAACAGCACGCCCGGTGACAGGGTTACTAGGCAGCATATACAGTGGCCAAGTGCCATTTGCCACCCCAGTAGGATTCAATACCCCACAAGGTGGAATTCCCATCCCCAATGCCAATGGTGCCATTCCTAAAGTGAATGGTGTCACTGGAATTCCATTAGGCACCGGTTTGGCCGGCACCACCTTTGCACCAAACAACAACAACCAAAACAATGCACAGTTAGAGATAGGGCCTGATGGGTTGGGGCTTGGTTTTGGCACAATCACTGTGATTGATGATGTGTTGACCTCTCAAATTGAGTTGGGGTCACAAGTAGTTGGGAAGGCTCAAGGGGTGTATGTAGCAAGTTCTTCAGATGGGACTAGGCAGATGATGGCATTCACAGCGCTTTTCGAAGAAGGCGAGTATGGTGATAGCTTGAACTTCTATGGCTTGTACAAGATAGGAAGCAGCATGTCACAGTTGTCTGTTTTAGGGGGCACAGGGAAGTTCAAGAATGCAAAGGGGTTTGCTGAGCTGAGACCTCTTATCCCACCAGGGCAAGTCTCCACTGATGGTGCTGAGACACTGCTCAGGATCACTGTCCATTTGAACTACTAA
>Glyma20g19920.1 sequence type=predicted peptide gene model=Glyma20g19920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLGSSATVFGVAMLLAFALMTMPMCMADTEPINIVELYMHDILGGSNPTARPVTGLLGSIYSGQVPFATPVGFNTPQGGIPIPNANGAIPKVNGVTGIPLGTGLAGTTFAPNNNNQNNAQLEIGPDGLGLGFGTITVIDDVLTSQIELGSQVVGKAQGVYVASSSDGTRQMMAFTALFEEGEYGDSLNFYGLYKIGSSMSQLSVLGGTGKFKNAKGFAELRPLIPPGQVSTDGAETLLRITVHLNY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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