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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma20g19680

Feature Type:gene_model
Chromosome:Gm20
Start:27899099
stop:27900927
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g19680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10250AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195 SoyBaseE_val: 3.00E-73ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0710 KOG Molecular chaperone (small heat-shock protein Hsp26/Hsp42) JGI ISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF14Panther LETHAL(2) ESSENTIAL FOR LIFE - RELATED JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_I1NEI9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NEI9_SOYBN SoyBaseE_val: 4.00E-109ISS
UniRef100_Q39820UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hsp22.5 n=1 Tax=Glycine max RepID=Q39820_SOYBN SoyBaseE_val: 2.00E-97ISS

Expression Patterns of Glyma20g19680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g19680 not represented in the dataset
Glyma20g19680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g19680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g078400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g19680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g19680
>Glyma20g19680.2   sequence type=CDS   gene model=Glyma20g19680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTCTCAGAAGGAGTAAAGGAATCACTAAGACGCCTTTCAAATGTAATTTGGATGGCTGAGGAATTACATAGAGTAGCCGATTTCTTGCTGCCAAACATATTATTCATCCAAATACCCTCTTGGTTACCATTCACAAATCATCCAAATACCCTCTTGGGTGATCTATGGTCTAATCATTTCCCTGATCCATTTCAAGTGTTAGATCAAATCCCATTTGGGGTTCATAGAGATGAAACAATCACATCTCTATCATCACATGCAAGAGTGGATTGGAAGGAGACACCAGAAGGGCGTGTCATAATGCTAGATGTGCCAGGGTTGAAGAGAGATGCGATCAAGATAGAAGTGGAAGGGAATAGAGTGTTGAGAGTGAGTGGAGAAAGGAAGAGGAAAGAGGAGAAGGAAGGAGATCACTGGCATAGAGTGGAGAGATCCTATGGCAAATTCTGGAGGCAGTTCAAGGTGCCAGACAATGTGGACTTGGATTTTGTCAAGGCTAAGATGGAGAATAGAGTGCTTACTCTCACAATGAATAACTTGTCACCTAATAAGGTCAAAGGTCCAAGGTTGGTCAGCATTGCAGGGGATGATGAGCAAGCTCCCAAGCTCAAGGGTAATGAAGACAAGCAGGAGCTTTGA
Predicted protein sequences of Glyma20g19680
>Glyma20g19680.2   sequence type=predicted peptide   gene model=Glyma20g19680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFSEGVKESLRRLSNVIWMAEELHRVADFLLPNILFIQIPSWLPFTNHPNTLLGDLWSNHFPDPFQVLDQIPFGVHRDETITSLSSHARVDWKETPEGRVIMLDVPGLKRDAIKIEVEGNRVLRVSGERKRKEEKEGDHWHRVERSYGKFWRQFKVPDNVDLDFVKAKMENRVLTLTMNNLSPNKVKGPRLVSIAGDDEQAPKLKGNEDKQEL*






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