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Report for Sequence Feature Glyma20g19590

Feature Type:gene_model
Chromosome:Gm20
Start:27604857
stop:27606056
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g19590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43960AT Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691220 REVERSE LENGTH=391 SoyBaseE_val: 1.00E-23ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006913GO-bp Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR10693Panther RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED JGI ISS
PTHR10693:SF8Panther NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_B9SQT0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ras-GTPase-activating protein-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQT0_RICCO SoyBaseE_val: 9.00E-30ISS
UniRef100_UPI000233D9F6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D9F6 related cluster n=1 Tax=unknown RepID=UPI000233D9F6 SoyBaseE_val: 3.00E-40ISS

Expression Patterns of Glyma20g19590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g19590 not represented in the dataset
Glyma20g19590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g19590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g19590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g19590
>Glyma20g19590.1   sequence type=CDS   gene model=Glyma20g19590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAATCTTGATTCAAAATTGAATGCTTCAAGTGCAACCAATAAACCTGGTAAGTTCTTGCACCAGTTGTGTTCTTGTACCATACATTCTTTCTTGCATCATGTATTGTCACTACCACTAATCTTGATTTTTTTGGGATTGCTTTCAGATAAAATCAAGTCTGTTTATGTGAGAAACTTGTCACCTGCAGTGTCTCCTAAAATTGAAGACGAATTCAAGAATTTTGGTAGAATCCGGCTTGATGGTGTTGTTATTAGAAGTCACAAGGATGTCGGTGTTTGTTATGCATTTGTTGAATTTGAAGATATGACTGGCGTTCATAATGCATTTGGGATATGCACTACACTCTTGAATTGTGATGTAGTAATGCACCTTGACCCAAAGCTAATACTGAACTTGCTATCAGGATCTGTTCAAATAGCAGGAAGACAAGTATACATTGAAGAACGAAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAAGGATGGTTCATATCCTCAACTGCTACATCTTGCTTCCCTATCCGGAATACTAAAA
Predicted protein sequences of Glyma20g19590
>Glyma20g19590.1   sequence type=predicted peptide   gene model=Glyma20g19590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RNLDSKLNASSATNKPGKFLHQLCSCTIHSFLHHVLSLPLILIFLGLLSDKIKSVYVRNLSPAVSPKIEDEFKNFGRIRLDGVVIRSHKDVGVCYAFVEFEDMTGVHNAFGICTTLLNCDVVMHLDPKLILNLLSGSVQIAGRQVYIEERRPNSNIPSRGGKDGSYPQLLHLASLSGILK






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