Report for Sequence Feature Glyma20g19550
Feature Type: gene_model
Chromosome: Gm20
Start: 27384360
stop: 27387903
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g19550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G02390 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3741) | chr5:508764-511710 REVERSE LENGTH=835
SoyBase E_val: 1.00E-79 ISS
GO:0048235 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR21726 Panther
PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED
JGI ISS
PTHR21726:SF3 Panther
gb def: Hypothetical protein T1E22 150
JGI ISS
PF12552 PFAM
Protein of unknown function (DUF3741)
JGI ISS
UniRef100_F4HSD5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein Obg/CgtA n=1 Tax=Arabidopsis thaliana RepID=F4HSD5_ARATH
SoyBase E_val: 1.00E-21 ISS
UniRef100_UPI000233C90D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C90D related cluster n=1 Tax=unknown RepID=UPI000233C90D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g19550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma20g19550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g077800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g19550
Coding sequences of Glyma20g19550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g19550.2 sequence type=CDS gene model=Glyma20g19550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTCTGTTTCCACTTCATAAATGCCACAATTTCGTTCACTTTACAGGAGCTAAAATTCCAGGAACTTCTGATGATTCAGGGGTTCACTCTATTCCAGAACATTATAAGCCACATACAGAACTATCTAATGTTGAAGAAAAGCCAGTATACTCCTCTCCACCAGCCAAAATTACTATCAAATCCCGATTAAGATCACTTCTTAATGAAGATATATACAGAAGGAAGAGTGGACACAAGAGAAGCTCAACCTGCCCTGCAAAGTCGCAACTAACTCATGCCAATTCTGTTCACAACTTAGAGGTTGATCTACTTGGTGAATTGTTACTAACTGTTCAGAGCCCTGACCCAGTCCTAGAAACCTTTCAAAACCATCTTGCTGCTGGTACATTGGATGAGTTGACACCAGTTTTATATGAGAAACCAATTGCCAACAATGACAAATGTGTAGATTGTGGAACAATGTTTTCTAAAGACATTTTGGAACATAGCAAGATTCATAAGCACTTGTGCTCTCCTAGTCAAGGTGGTCCTGAAGAGAAGTTGATGAATGCACAGATACTTACAACTGATGCTTCACCCCATCTTGTCAAGGACTTTCTTGATGCATTGGATGTGATCAACACAAACAAGGACTTCCTATTAGAATATATACAGGATCTAGGCTCTCATTTGCCATTCCACACTCATGATCAACAATCTTTCAACGGTAAACAGAGACGAGCCAAATCTCTCTCATTTCCTGTATCTGCCTCATCATCAGGAAGCCAAGATTCTGTTTCAGGCCAACTCATAAATCAAATGGTAGATTATTGGTTGGATTCAGAAGAAGAGAAGTTGCAAAATCAAAGTAACATGCAAAATACGAGCATGGATGAGTCCTCAGAAGATTCTCACCAACAGTCCTTACCATCAGGTTTTTCAAATAATTATGATCAATGGGGTGAAAGAGGTACTAATTCTCCATCAGTTTCATCCCATGTTCCCAACAATGTGAAAACTAGGCATTTCAGGGATCTTAGAAAGAAGATGAAGCACATAATTGAAGATGGAAGAAATGAAAAGCATCGCATTACCATGGATGCTATACTTGACAAAATTCCTTGTGGAAAGAGGCTCACAAAAAAAGTAAAAAAGTTTATCCACATCAAATCCAAAGACCCCACAGTTAAATGGGAAGATGAAGACCGTGCAACCAGCGGTTTTGGTAGCCATCTCTCTTCTAATTCCTTCAACAAGCATCAACCATCACCCATGAGGACTTCATTTCTAAAAGATTCAGCTGGTAGATATTCTCAGTTGTATCATCAGACTTGTTTTAACAGTGATGCCAAGTATCCTAAGGCTGAGAACTTAAGATTGAGAACAGAAGAGAGAAATTCAATATTAAAGACCCCAAAATCCTTTAAAAGGTTTCTTTCAATGCCTAATTTAAAATCTTACTTTCACCATAATGAGGAGCTGCCTTTACCTTTATCCCCCCAGAATTCAATCAAGAATTTTGGAGATAGAACAACAAGCACAAATGTCACTGATCAGCAACAAAGAAGTTTTGACAATAATGATGATTCAAAGAGTCAAATTTTACCACCTACATTTGTTGATAATATAAATCAAGACAGCAATTTGAATGTTGACCAAAAGCAACTTCTTGCCAGGAGTGCTTCAAAATCAAGATTAGATTTTAGTACTGAGGCAGAGGCAGATAAGAGCATAGGAATTGAAGGTTTAGGTGACTTGAGAGACAGTGAACAAGACATTGGAGCTAAAACAGAATCTATTGTGCCAGTGGAAGCAAGCTCAGTCTTCTCTTCTGACACTAGCTTCCTAGATTTTACATTTGATCTCGAGAACTTAAACATACAGGAAGAGGCTAAAGAGGATCACCCTGAGAAGGTTGAGAATTTTCAAAACCTTGGAACTCTAAGCAAGCGTTTCAACTATGAAATTCCAAGTATTGAAGTGGATCCAAGTAATGAAGCTGCATTTAATTATGTGAGAAAGGTTTTAGAGCTTTCTGGGTTCACTGGCCATGATTCCCTTGGGATATGGTATTCTGATAACCAACCACTTGATCCTTCAATGTATGAAGAATTGGAGGGGTGCTTGCTTCTTGATCCTGATTGTTCTCGTAATAGTGAAGGTGGAGAATGTAATCATCATCTGCTTCTGTTTGATATAATCAATGAAGGGTTGCTGGAGATTTTTGGCAGATCTTACAACTATTATCCAAGACCATTGTCTTATCTCTCCCATGTTCACCCACTACCATCAGGAGAAAATGTTCTCTGTAAAGTGTGGACACTCATTAGCTGGTATCTGATGAACTCAACAACATCTGAGCTTTACCTATCATTGGATTATTATGTGAGCAAAGATCTTGCAAAATATGATGGGTGGATGAATCTCCAATTTGATTCTGAATGTGTGGGGCTTGAGCTAGATGACTTGATTTTTGAAGATCTATTGGAGGAAATAATCTCCACCTAA
Predicted protein sequences of Glyma20g19550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g19550.2 sequence type=predicted peptide gene model=Glyma20g19550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
FLFPLHKCHNFVHFTGAKIPGTSDDSGVHSIPEHYKPHTELSNVEEKPVYSSPPAKITIKSRLRSLLNEDIYRRKSGHKRSSTCPAKSQLTHANSVHNLEVDLLGELLLTVQSPDPVLETFQNHLAAGTLDELTPVLYEKPIANNDKCVDCGTMFSKDILEHSKIHKHLCSPSQGGPEEKLMNAQILTTDASPHLVKDFLDALDVINTNKDFLLEYIQDLGSHLPFHTHDQQSFNGKQRRAKSLSFPVSASSSGSQDSVSGQLINQMVDYWLDSEEEKLQNQSNMQNTSMDESSEDSHQQSLPSGFSNNYDQWGERGTNSPSVSSHVPNNVKTRHFRDLRKKMKHIIEDGRNEKHRITMDAILDKIPCGKRLTKKVKKFIHIKSKDPTVKWEDEDRATSGFGSHLSSNSFNKHQPSPMRTSFLKDSAGRYSQLYHQTCFNSDAKYPKAENLRLRTEERNSILKTPKSFKRFLSMPNLKSYFHHNEELPLPLSPQNSIKNFGDRTTSTNVTDQQQRSFDNNDDSKSQILPPTFVDNINQDSNLNVDQKQLLARSASKSRLDFSTEAEADKSIGIEGLGDLRDSEQDIGAKTESIVPVEASSVFSSDTSFLDFTFDLENLNIQEEAKEDHPEKVENFQNLGTLSKRFNYEIPSIEVDPSNEAAFNYVRKVLELSGFTGHDSLGIWYSDNQPLDPSMYEELEGCLLLDPDCSRNSEGGECNHHLLLFDIINEGLLEIFGRSYNYYPRPLSYLSHVHPLPSGENVLCKVWTLISWYLMNSTTSELYLSLDYYVSKDLAKYDGWMNLQFDSECVGLELDDLIFEDLLEEIIST*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
