SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02390 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3741) | chr5:508764-511710 REVERSE LENGTH=835 | SoyBase | E_val: 1.00E-79 | ISS |
| GO:0048235 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21726 | Panther | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED | JGI | ISS | |
| PTHR21726:SF3 | Panther | gb def: Hypothetical protein T1E22 150 | JGI | ISS | |
| PF12552 | PFAM | Protein of unknown function (DUF3741) | JGI | ISS | |
| UniRef100_F4HSD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein Obg/CgtA n=1 Tax=Arabidopsis thaliana RepID=F4HSD5_ARATH | SoyBase | E_val: 1.00E-21 | ISS |
| UniRef100_UPI000233C90D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C90D related cluster n=1 Tax=unknown RepID=UPI000233C90D | SoyBase | E_val: 0 | ISS |
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Glyma20g19550 not represented in the dataset |
Glyma20g19550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g077800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g19550.2 sequence type=CDS gene model=Glyma20g19550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCTGTTTCCACTTCATAAATGCCACAATTTCGTTCACTTTACAGGAGCTAAAATTCCAGGAACTTCTGATGATTCAGGGGTTCACTCTATTCCAGAACATTATAAGCCACATACAGAACTATCTAATGTTGAAGAAAAGCCAGTATACTCCTCTCCACCAGCCAAAATTACTATCAAATCCCGATTAAGATCACTTCTTAATGAAGATATATACAGAAGGAAGAGTGGACACAAGAGAAGCTCAACCTGCCCTGCAAAGTCGCAACTAACTCATGCCAATTCTGTTCACAACTTAGAGGTTGATCTACTTGGTGAATTGTTACTAACTGTTCAGAGCCCTGACCCAGTCCTAGAAACCTTTCAAAACCATCTTGCTGCTGGTACATTGGATGAGTTGACACCAGTTTTATATGAGAAACCAATTGCCAACAATGACAAATGTGTAGATTGTGGAACAATGTTTTCTAAAGACATTTTGGAACATAGCAAGATTCATAAGCACTTGTGCTCTCCTAGTCAAGGTGGTCCTGAAGAGAAGTTGATGAATGCACAGATACTTACAACTGATGCTTCACCCCATCTTGTCAAGGACTTTCTTGATGCATTGGATGTGATCAACACAAACAAGGACTTCCTATTAGAATATATACAGGATCTAGGCTCTCATTTGCCATTCCACACTCATGATCAACAATCTTTCAACGGTAAACAGAGACGAGCCAAATCTCTCTCATTTCCTGTATCTGCCTCATCATCAGGAAGCCAAGATTCTGTTTCAGGCCAACTCATAAATCAAATGGTAGATTATTGGTTGGATTCAGAAGAAGAGAAGTTGCAAAATCAAAGTAACATGCAAAATACGAGCATGGATGAGTCCTCAGAAGATTCTCACCAACAGTCCTTACCATCAGGTTTTTCAAATAATTATGATCAATGGGGTGAAAGAGGTACTAATTCTCCATCAGTTTCATCCCATGTTCCCAACAATGTGAAAACTAGGCATTTCAGGGATCTTAGAAAGAAGATGAAGCACATAATTGAAGATGGAAGAAATGAAAAGCATCGCATTACCATGGATGCTATACTTGACAAAATTCCTTGTGGAAAGAGGCTCACAAAAAAAGTAAAAAAGTTTATCCACATCAAATCCAAAGACCCCACAGTTAAATGGGAAGATGAAGACCGTGCAACCAGCGGTTTTGGTAGCCATCTCTCTTCTAATTCCTTCAACAAGCATCAACCATCACCCATGAGGACTTCATTTCTAAAAGATTCAGCTGGTAGATATTCTCAGTTGTATCATCAGACTTGTTTTAACAGTGATGCCAAGTATCCTAAGGCTGAGAACTTAAGATTGAGAACAGAAGAGAGAAATTCAATATTAAAGACCCCAAAATCCTTTAAAAGGTTTCTTTCAATGCCTAATTTAAAATCTTACTTTCACCATAATGAGGAGCTGCCTTTACCTTTATCCCCCCAGAATTCAATCAAGAATTTTGGAGATAGAACAACAAGCACAAATGTCACTGATCAGCAACAAAGAAGTTTTGACAATAATGATGATTCAAAGAGTCAAATTTTACCACCTACATTTGTTGATAATATAAATCAAGACAGCAATTTGAATGTTGACCAAAAGCAACTTCTTGCCAGGAGTGCTTCAAAATCAAGATTAGATTTTAGTACTGAGGCAGAGGCAGATAAGAGCATAGGAATTGAAGGTTTAGGTGACTTGAGAGACAGTGAACAAGACATTGGAGCTAAAACAGAATCTATTGTGCCAGTGGAAGCAAGCTCAGTCTTCTCTTCTGACACTAGCTTCCTAGATTTTACATTTGATCTCGAGAACTTAAACATACAGGAAGAGGCTAAAGAGGATCACCCTGAGAAGGTTGAGAATTTTCAAAACCTTGGAACTCTAAGCAAGCGTTTCAACTATGAAATTCCAAGTATTGAAGTGGATCCAAGTAATGAAGCTGCATTTAATTATGTGAGAAAGGTTTTAGAGCTTTCTGGGTTCACTGGCCATGATTCCCTTGGGATATGGTATTCTGATAACCAACCACTTGATCCTTCAATGTATGAAGAATTGGAGGGGTGCTTGCTTCTTGATCCTGATTGTTCTCGTAATAGTGAAGGTGGAGAATGTAATCATCATCTGCTTCTGTTTGATATAATCAATGAAGGGTTGCTGGAGATTTTTGGCAGATCTTACAACTATTATCCAAGACCATTGTCTTATCTCTCCCATGTTCACCCACTACCATCAGGAGAAAATGTTCTCTGTAAAGTGTGGACACTCATTAGCTGGTATCTGATGAACTCAACAACATCTGAGCTTTACCTATCATTGGATTATTATGTGAGCAAAGATCTTGCAAAATATGATGGGTGGATGAATCTCCAATTTGATTCTGAATGTGTGGGGCTTGAGCTAGATGACTTGATTTTTGAAGATCTATTGGAGGAAATAATCTCCACCTAA
>Glyma20g19550.2 sequence type=predicted peptide gene model=Glyma20g19550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high FLFPLHKCHNFVHFTGAKIPGTSDDSGVHSIPEHYKPHTELSNVEEKPVYSSPPAKITIKSRLRSLLNEDIYRRKSGHKRSSTCPAKSQLTHANSVHNLEVDLLGELLLTVQSPDPVLETFQNHLAAGTLDELTPVLYEKPIANNDKCVDCGTMFSKDILEHSKIHKHLCSPSQGGPEEKLMNAQILTTDASPHLVKDFLDALDVINTNKDFLLEYIQDLGSHLPFHTHDQQSFNGKQRRAKSLSFPVSASSSGSQDSVSGQLINQMVDYWLDSEEEKLQNQSNMQNTSMDESSEDSHQQSLPSGFSNNYDQWGERGTNSPSVSSHVPNNVKTRHFRDLRKKMKHIIEDGRNEKHRITMDAILDKIPCGKRLTKKVKKFIHIKSKDPTVKWEDEDRATSGFGSHLSSNSFNKHQPSPMRTSFLKDSAGRYSQLYHQTCFNSDAKYPKAENLRLRTEERNSILKTPKSFKRFLSMPNLKSYFHHNEELPLPLSPQNSIKNFGDRTTSTNVTDQQQRSFDNNDDSKSQILPPTFVDNINQDSNLNVDQKQLLARSASKSRLDFSTEAEADKSIGIEGLGDLRDSEQDIGAKTESIVPVEASSVFSSDTSFLDFTFDLENLNIQEEAKEDHPEKVENFQNLGTLSKRFNYEIPSIEVDPSNEAAFNYVRKVLELSGFTGHDSLGIWYSDNQPLDPSMYEELEGCLLLDPDCSRNSEGGECNHHLLLFDIINEGLLEIFGRSYNYYPRPLSYLSHVHPLPSGENVLCKVWTLISWYLMNSTTSELYLSLDYYVSKDLAKYDGWMNLQFDSECVGLELDDLIFEDLLEEIIST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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