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Report for Sequence Feature Glyma20g19295

Feature Type:gene_model
Chromosome:Gm20
Start:27181732
stop:27182854
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g19295
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36680AT Annotation by Michelle Graham. TAIR10: Modifier of rudimentary (Mod(r)) protein | chr2:15369314-15370726 REVERSE LENGTH=139 SoyBaseE_val: 3.00E-27ISS
GO:0000813GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ESCRT I complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR13678Panther WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED JGI ISS
PTHR13678:SF1Panther gb def: similar to hypothetical protein flj12750 [mus musculus] JGI ISS
UniRef100_Q3EBL9-2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Isoform 2 of Vacuolar protein-sorting-associated protein 37 homolog 2 n=1 Tax=Arabidopsis thaliana RepID=Q3EBL9-2 SoyBaseE_val: 2.00E-24ISS
UniRef100_UPI000233DD26UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DD26 related cluster n=1 Tax=unknown RepID=UPI000233DD26 SoyBaseE_val: 3.00E-66ISS

Expression Patterns of Glyma20g19295
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g19295 not represented in the dataset
Glyma20g19295 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g19295 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g19295
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g19295
>Glyma20g19295.1   sequence type=CDS   gene model=Glyma20g19295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGATCACAAGAGCAGCAATCACAGGATGGTTCCTCACAGTCACATTCATGGTATCTGCCGTCGGTGGTCAGTTCACCAACTTCATCCAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTGTCGCAGAGGCCCTCATCTCATGTTCCACCTTCCAAAGCTGTTGCAGTTATTGCCATTTTGAAGGACAAGAGTGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAATGTTACTATTCACTTCCTAATTCCAAAGCCACAAGGTAAATAA
Predicted protein sequences of Glyma20g19295
>Glyma20g19295.1   sequence type=predicted peptide   gene model=Glyma20g19295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GSQEQQSQDGSSQSHSWYLPSVVSSPTSSRPVTPTASSSSLSQRPSSHVPPSKAVAVIAILKDKSVDELQKFLSDKDAYQQFLHSLDQVNIQTNVTIHFLIPKPQGK*






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