Glyma20g19210 - SoyBase

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Report for Sequence Feature Glyma20g19210

Feature Type:	gene_model
Chromosome:	Gm20
Start:	26867043
stop:	26880351
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g19210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13720	AT	Annotation by Michelle Graham. TAIR10: Inosine triphosphate pyrophosphatase family protein \| chr4:7967166-7968894 REVERSE LENGTH=206	SoyBase	E_val: 2.00E-120	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016462	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyrophosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3222	KOG	Inosine triphosphate pyrophosphatase	JGI		ISS
PTHR11067	Panther	INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN	JGI		ISS
PF01725	PFAM	Ham1 family	JGI		ISS
UniRef100_B7FMR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inosine triphosphate pyrophosphatase n=1 Tax=Medicago truncatula RepID=B7FMR3_MEDTR	SoyBase	E_val: 3.00E-129	ISS
UniRef100_C6TC28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TC28_SOYBN	SoyBase	E_val: 1.00E-145	ISS

Expression Patterns of Glyma20g19210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g19210

Paralog	Evidence	Comments
Glyma10g24656	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g19210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g077400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g19210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g19210

Limit To All Plant Sequences

>Glyma20g19210.2   sequence type=transcript   gene model=Glyma20g19210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACATCACACAACACAGTGACGCCACCGTAGTGGGAAGCCATCGTTGTCTCGGCGAAGAATCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGAAAGCTGAACGTGGTAGGTTATAGGCTACAAGCTCTTTATTAAAAGTCCCTTGAAATTAAACGGAAATTGTTTCTAGCAGTAACAATGTGGAAATTACTTTGAACTTAAATACTGCTTTTGTTTACAACTTCTCCAGCAAAAGAACAAAAACCAAACTTAGAAAAATATACCAAAGAAAAACTAATCTTAAAGATGTTTTGGTTTGAACAAAAATTGCTACGAGACTAAAAAATAGAGCTTAATCGATATACATTGTTGGTGTAAAGTCTTTTGCACTGTCAATTGATCACGAGATTTAATTTTTTTTTCCTGTAATTTAGTGCTATTTTCATTTTTGTTCTT

Coding sequences of Glyma20g19210

Limit To All Plant Sequences

>Glyma20g19210.1   sequence type=CDS   gene model=Glyma20g19210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGA

>Glyma20g19210.2   sequence type=CDS   gene model=Glyma20g19210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACATCACACAACACAGTGACGCCACCGTAGTGGGAAGCCATCGTTGTCTCGGCGAAGAATCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGA

Predicted protein sequences of Glyma20g19210

Limit To All Plant Sequences

>Glyma20g19210.1   sequence type=predicted peptide   gene model=Glyma20g19210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAARGLVLSRPVTFVTANAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARIAALQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGPDSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEARFTFDVKNF*

>Glyma20g19210.2   sequence type=predicted peptide   gene model=Glyma20g19210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HITQHSDATVVGSHRCLGEESYKIWEMAAARGLVLSRPVTFVTANAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARIAALQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGPDSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEARFTFDVKNF*

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