Glyma20g19200 - SoyBase

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Report for Sequence Feature Glyma20g19200

Feature Type:	gene_model
Chromosome:	Gm20
Start:	26831454
stop:	26837430
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g19200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13710	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr4:7962550-7966012 FORWARD LENGTH=470	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0030570	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity	SoyBase	N/A	ISS
PF00544	PFAM	Pectate lyase	JGI		ISS
UniRef100_B9TU35	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectate lyase 1-27 n=1 Tax=Populus tremula x Populus tremuloides RepID=B9TU35_9ROSI	SoyBase	E_val: 0	ISS
UniRef100_I1NEH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEH7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g19200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g19200

Paralog	Evidence	Comments
Glyma10g24630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g19200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g077300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g19200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g19200

Limit To All Plant Sequences

>Glyma20g19200.1   sequence type=CDS   gene model=Glyma20g19200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAACCTTCTGAGTCCACTCCACCCAATTCTCTCTCTCTTCTCTTTCTCTCTTCAACATTCTCTCTCACCAAAGCAACAACACACACACTGAGAGCGAGGGGAATTCAACTTTCTGCAATGGCGGTTTCTTCTTCTTCTGCAACAAAATGGGTCGTCTTCTTGCTTCTGGCGCTGCTTATTCGAGAAGAAGCTATGGCTACACCACAGATCTCTGACCTCAGGAATCTTGAAGTTGAAAGACACAGGTTGCCGAGCTTGACGAACTCGTCAATGGCGGAGAGGGCAAAAGAGGCTGAGAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAAAACAGCACAGAGAGGAGGAAGTTGGGATTTTTCTCTTGTGGAACTGGCAACCCCATTGATGATTGCTGGCGTTGCGACCCCAACTGGCAACGCAATCGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGCCGAAACGCCATCGGTGGCCGTGATGGAAAATTCTATGTGGTGACTGACCCCAGGGATGATGACCCTGTGAACCCGAAACCCGGCACTCTTCGCCATGCTGTGATCCAGGATAAGCCATTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGCTGAAACAAGAGCTGATCATGAACAGCTTCAAGACAATTGATGGTAGAGGAGTCAATGTGCACATTGCTAATGGAGCATGCATCACAATTCAGTTTGTTACCAATGTCATCATCCATGGCTTGCACATTCATGATTGCAAACCTACTGGAAATGCTATGGTGAGAAGCTCCCCAACCCACTTTGGTTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCACACTGTGCTGATGGCCTTGTGGATGCTGTCCTGGGCTCAACAGCCATAACTATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCATAGTGACTCTTACACAAGAGACAAGCAGATGCAAGTGACCATTGCATACAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCACGTTGTAGACATGGATATTTCCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAACAGATACAATGCTCCTACTAACCGTTTTGCCAAGGAGGTGACAAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCTGAATGGTGCCTATTTCACACCATCTGGTGCTGGAGCCTCAGCAAGCTATGCAAGAGCCTCTAGCTTAGGAGCAAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTAGGTTGCAAAAGAGGCAGTCAGTGCTAG

Predicted protein sequences of Glyma20g19200

Limit To All Plant Sequences

>Glyma20g19200.1   sequence type=predicted peptide   gene model=Glyma20g19200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEPSESTPPNSLSLLFLSSTFSLTKATTHTLRARGIQLSAMAVSSSSATKWVVFLLLALLIREEAMATPQISDLRNLEVERHRLPSLTNSSMAERAKEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVLGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPTNRFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGSQC*

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