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Report for Sequence Feature Glyma20g18933

Feature Type:gene_model
Chromosome:Gm20
Start:26609182
stop:26633737
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g18933
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55530AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:20595300-20597188 REVERSE LENGTH=273 SoyBaseE_val: 3.00E-16ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009789GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0043231GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22766Panther RING FINGER PROTEIN 24-RELATED JGI ISS
PTHR22766:SF25Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_D7KE78UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KE78_ARALL SoyBaseE_val: 1.00E-55ISS
UniRef100_UPI000233C7A7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C7A7 related cluster n=1 Tax=unknown RepID=UPI000233C7A7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g18933
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g18933 not represented in the dataset
Glyma20g18933 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g18933
ParalogEvidenceComments
Glyma10g24581 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g18933 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g076700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g18933
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g18933
>Glyma20g18933.2   sequence type=transcript   gene model=Glyma20g18933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAATTGTGCATAGAATGAAAAAGGAATAGAAGAATTTCCGTGCCTTGATTTCAAGTCACTTTTTGCCCTGGGATTCAGTTTGCGCTGTTCCGATTCATCTACGTATTCCGATCGACCCGACCCGACCCGACCCGTTTCACGAACTGATAAATTCCCAACCATTCTCGCTCTCTCTGTTCATCTTTCTCTTTCAATTCACATTCCCTCACTACTACTCTTCAGGATATGGCAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAATAACTGTAAGGCGTGATGATCAGAAATATTTAGGTAATCCTGAGAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAAGAATAACCACAGTAACTTTATAACATTGTCCCCATCAGAGGAATCTTATCCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCATCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAGTGGAAAGTTCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAACACTAAAAGCAACTAATGGGAACTCTTTGTTGCCAATCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTAACTGGAAAGTGTAAACTAGATATTAAAACACTTCCAGGTACTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATCACAAAATGAAAAGGAAGTGTCGTTGCCTCCTCGTGTTTGTACCTCTCCACGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTAGCAGAACAGAGCAACCACCAAACTAAAGATGCTGAACAGAGTCATACTGGTCATTCGGTTTCTAGCAATACAGTGTCACCGGTTAGTGTTGATGACTTAGTTGCTGAAGAGAGAGGCGATGGTAGAGGGAAAGGAAAGGAAATACTTGTTCATCCTTCATCTCATAATAGACTGACTTTTCGCACTGCTGCCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCCAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGCCAAGGTGGTTGGAGAACTACACATAATGAGAGGAATGCTAATCAGCCCTCTAATGATGTAAATGGGCATCATTCAAGGAGAAGTGATGATATTGGAAGATTTAATTATAGACAGAATACAAACAGAATGGACAGAAGAAACACTGGGAGTGGTCAAAGCAGCAAGCATGTACATGTTTCTCAATCAGATCATACAGCTCAACCAACTTCTGTGTTCATTCCATATGTGGACCAGTCATCTAGAGCCCATCCTACTGCTGACATTCTGACCAAAAGGCAAAGGAAACGTGAATCACCTTCAGGGATTATGTTCCTCGGTTCAACTGGGGAATCATCAAGCTCATCCCAGAACCCTGAAGTGATTGAGTTGTTATCTACACCAAGGGGTTCATCAAACTCATCCCGGAGCTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAGCTCGGAAGCTCGGGCACGGCAAATGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTCTGCGTACAACTATTGATAGCCACAGCATGAATCAACCTACACAGCTTCCAAGGGCAAATAGACAGTCTCGCACACGGTTTCAACAAAACCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTTCTACAAGTCGGACCCGGGCACCTAACACATCATCTAGGGGAAGAGGCCCCCAGTTTCCTTTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAATAGGGGATTTCAGCGATATGGGAATGGCTGATGACATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTAGCCCTTGATGAGGGAAATCACCAGCATACTGGTGCATCTGCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCTGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGATCCCTGTCCAAGGAGAAACTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGTTGCAGAGGAAAGCATCATGTCCGGTGTGCAAGTCATCCATCACCTAATTTATTTTGGGATTTAAATGGTTAGTTTAGGGTGCTGGTGTGTGTTATCTCAGCCACCTCATTGTCTTTCAAGTTCTGGGACATGAATGATGCATGTCGGGAAAACTGCTCTGAATCATGGTGTGTAATTGAACTTCTACTGTTGGTGCTAATGAGGAGTGTCTGCAAAGGAGAGGCAACTCTGAAGGCCGTATTATTTCTTAACATAGATGGCCATTTAGGAATCCTAATGTCGAGATGTAAACCAATATTTAATATTGTAATTTTATTACATCAACATTTTAGCTTGCTTGTCATATTTAACATTCTAAAGACAATTGTTAATATACTTTCTCCCCTTTACCTCCCTAATAACTCTATGTTAATTGTCGT
Coding sequences of Glyma20g18933
>Glyma20g18933.1   sequence type=CDS   gene model=Glyma20g18933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAATAACTGTAAGGCGTGATGATCAGAAATATTTAGGTAATCCTGAGAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAAGAATAACCACAGTAACTTTATAACATTGTCCCCATCAGAGGAATCTTATCCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCATCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAGTGGAAAGTTCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAACACTAAAAGCAACTAATGGGAACTCTTTGTTGCCAATCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTAACTGGAAAGTGTAAACTAGATATTAAAACACTTCCAGGTACTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATCACAAAATGAAAAGGAAGTGTCGTTGCCTCCTCGTGTTTGTACCTCTCCACGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTAGCAGAACAGAGCAACCACCAAACTAAAGATGCTGAACAGAGTCATACTGGTCATTCGGTTTCTAGCAATACAGTGTCACCGGTTAGTGTTGATGACTTAGTTGCTGAAGAGAGAGGCGATGGTAGAGGGAAAGGAAAGGAAATACTTGTTCATCCTTCATCTCATAATAGACTGACTTTTCGCACTGCTGCCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCCAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGCCAAGGTGGTTGGAGAACTACACATAATGAGAGGAATGCTAATCAGCCCTCTAATGATGTAAATGGGCATCATTCAAGGAGAAGTGATGATATTGGAAGATTTAATTATAGACAGAATACAAACAGAATGGACAGAAGAAACACTGGGAGTGGTCAAAGCAGCAAGCATGTACATGTTTCTCAATCAGATCATACAGCTCAACCAACTTCTGTGTTCATTCCATATGTGGACCAGTCATCTAGAGCCCATCCTACTGCTGACATTCTGACCAAAAGGCAAAGGAAACGTGAATCACCTTCAGGGATTATGTTCCTCGGTTCAACTGGGGAATCATCAAGCTCATCCCAGAACCCTGAAGTGATTGAGTTGTTATCTACACCAAGGGGTTCATCAAACTCATCCCGGAGCTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAGCTCGGAAGCTCGGGCACGGCAAATGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTCTGCGTACAACTATTGATAGCCACAGCATGAATCAACCTACACAGCTTCCAAGGGCAAATAGACAGTCTCGCACACGGTTTCAACAAAACCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTTCTACAAGTCGGACCCGGGCACCTAACACATCATCTAGGGGAAGAGGCCCCCAGTTTCCTTTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAATAGGGGATTTCAGCGATATGGGAATGGCTGATGACATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTAGCCCTTGATGAGGGAAATCACCAGCATACTGGTGCATCTGCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCTGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGATCCCTGTCCAAGGAGAAACTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGTTGCAGAGGAAAGCATCATGTCCGGTGTGCAAGTCATCCATCACCTAA

>Glyma20g18933.2   sequence type=CDS   gene model=Glyma20g18933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAATAACTGTAAGGCGTGATGATCAGAAATATTTAGGTAATCCTGAGAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAAGAATAACCACAGTAACTTTATAACATTGTCCCCATCAGAGGAATCTTATCCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCATCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAGTGGAAAGTTCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAACACTAAAAGCAACTAATGGGAACTCTTTGTTGCCAATCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTAACTGGAAAGTGTAAACTAGATATTAAAACACTTCCAGGTACTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATCACAAAATGAAAAGGAAGTGTCGTTGCCTCCTCGTGTTTGTACCTCTCCACGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTAGCAGAACAGAGCAACCACCAAACTAAAGATGCTGAACAGAGTCATACTGGTCATTCGGTTTCTAGCAATACAGTGTCACCGGTTAGTGTTGATGACTTAGTTGCTGAAGAGAGAGGCGATGGTAGAGGGAAAGGAAAGGAAATACTTGTTCATCCTTCATCTCATAATAGACTGACTTTTCGCACTGCTGCCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCCAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGCCAAGGTGGTTGGAGAACTACACATAATGAGAGGAATGCTAATCAGCCCTCTAATGATGTAAATGGGCATCATTCAAGGAGAAGTGATGATATTGGAAGATTTAATTATAGACAGAATACAAACAGAATGGACAGAAGAAACACTGGGAGTGGTCAAAGCAGCAAGCATGTACATGTTTCTCAATCAGATCATACAGCTCAACCAACTTCTGTGTTCATTCCATATGTGGACCAGTCATCTAGAGCCCATCCTACTGCTGACATTCTGACCAAAAGGCAAAGGAAACGTGAATCACCTTCAGGGATTATGTTCCTCGGTTCAACTGGGGAATCATCAAGCTCATCCCAGAACCCTGAAGTGATTGAGTTGTTATCTACACCAAGGGGTTCATCAAACTCATCCCGGAGCTCTGTCTTGGATCATGAAGTGGTTGATTTGTTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAGCTCGGAAGCTCGGGCACGGCAAATGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTCTGCGTACAACTATTGATAGCCACAGCATGAATCAACCTACACAGCTTCCAAGGGCAAATAGACAGTCTCGCACACGGTTTCAACAAAACCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTTCTACAAGTCGGACCCGGGCACCTAACACATCATCTAGGGGAAGAGGCCCCCAGTTTCCTTTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAATAGGGGATTTCAGCGATATGGGAATGGCTGATGACATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTAGCCCTTGATGAGGGAAATCACCAGCATACTGGTGCATCTGCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCTGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGATCCCTGTCCAAGGAGAAACTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGTTGCAGAGGAAAGCATCATGTCCGGTGTGCAAGTCATCCATCACCTAA
Predicted protein sequences of Glyma20g18933
>Glyma20g18933.1   sequence type=predicted peptide   gene model=Glyma20g18933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDMKIDHIVEVPDTPDRITVRRDDQKYLGNPEKRGRAFNAADEKNNHSNFITLSPSEESYPSQNAPIFRRAQTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEESGKFRHPKPAFSHRGSRDNATEDKKTLKATNGNSLLPIISDSSNTSRNALTGKCKLDIKTLPGTNISVDHGKGISLSNDSQSQNEKEVSLPPRVCTSPRGRGHKRLVRNGCISPHNIATMEKQLAEQSNHQTKDAEQSHTGHSVSSNTVSPVSVDDLVAEERGDGRGKGKEILVHPSSHNRLTFRTAASPVTNYEEINGPSNAIRNPLQYSGGQGGWRTTHNERNANQPSNDVNGHHSRRSDDIGRFNYRQNTNRMDRRNTGSGQSSKHVHVSQSDHTAQPTSVFIPYVDQSSRAHPTADILTKRQRKRESPSGIMFLGSTGESSSSSQNPEVIELLSTPRGSSNSSRSSVLDHEVVDLLSTPRYANRSSEDLDDNDNSSEARARQMEADERLARELQEQLYHDDPFEGRGIDEDLAWDLQRAEALLRTTIDSHSMNQPTQLPRANRQSRTRFQQNPSRRRAMAQASFSNRMSQWRSRSTSRTRAPNTSSRGRGPQFPLDMDLDMRLDILEALEDSIGDFSDMGMADDIFNARRDFTDADYEMLLALDEGNHQHTGASANLINSLPQSTILTDNFTDACAICLEIPVQGETIRHLPCLHKFHKDCIDPWLQRKASCPVCKSSIT*

>Glyma20g18933.2   sequence type=predicted peptide   gene model=Glyma20g18933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDMKIDHIVEVPDTPDRITVRRDDQKYLGNPEKRGRAFNAADEKNNHSNFITLSPSEESYPSQNAPIFRRAQTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEESGKFRHPKPAFSHRGSRDNATEDKKTLKATNGNSLLPIISDSSNTSRNALTGKCKLDIKTLPGTNISVDHGKGISLSNDSQSQNEKEVSLPPRVCTSPRGRGHKRLVRNGCISPHNIATMEKQLAEQSNHQTKDAEQSHTGHSVSSNTVSPVSVDDLVAEERGDGRGKGKEILVHPSSHNRLTFRTAASPVTNYEEINGPSNAIRNPLQYSGGQGGWRTTHNERNANQPSNDVNGHHSRRSDDIGRFNYRQNTNRMDRRNTGSGQSSKHVHVSQSDHTAQPTSVFIPYVDQSSRAHPTADILTKRQRKRESPSGIMFLGSTGESSSSSQNPEVIELLSTPRGSSNSSRSSVLDHEVVDLLSTPRYANRSSEDLDDNDNSSEARARQMEADERLARELQEQLYHDDPFEGRGIDEDLAWDLQRAEALLRTTIDSHSMNQPTQLPRANRQSRTRFQQNPSRRRAMAQASFSNRMSQWRSRSTSRTRAPNTSSRGRGPQFPLDMDLDMRLDILEALEDSIGDFSDMGMADDIFNARRDFTDADYEMLLALDEGNHQHTGASANLINSLPQSTILTDNFTDACAICLEIPVQGETIRHLPCLHKFHKDCIDPWLQRKASCPVCKSSIT*






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