Glyma20g18900 - SoyBase

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Report for Sequence Feature Glyma20g18900

Feature Type:	gene_model
Chromosome:	Gm20
Start:	26572159
stop:	26576754
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g18900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04780	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr1:1340891-1342965 REVERSE LENGTH=664	SoyBase	E_val: 7.00E-174	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0522	KOG	Ankyrin repeat protein	JGI		ISS
PTHR12447	Panther	UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF11904	PFAM	Protein of unknown function (DUF3424)	JGI		ISS
UniRef100_B9RWL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RWL2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DD20	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD20 related cluster n=1 Tax=unknown RepID=UPI000233DD20	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g18900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g18900

Paralog	Evidence	Comments
Glyma10g24570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g18900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g076600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g18900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g18900

Limit To All Plant Sequences

>Glyma20g18900.2   sequence type=CDS   gene model=Glyma20g18900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGCATTAATGTCTCAGAATATGCTCATAGTTCTGTGCACAAGGCCATAATATTGAAGGATCATGCTGGTCTTAAGGAGATACTTGGAGTTCTCCCAAAACTAGGTAACCCCCTTGAGATCAAAACTGAGGCTGCTTCAATAGCTGAGGATGAGAAAGCTGCAGCCATCTCTGTTGTGGTGGATAGGAGGGATGTGCCACATGGTGACACCCCTCTTCACATGGCTGCAAAACTGGGTGACATTGTTGCTACTGAAATGCTCATGGATGCCGGGGCAAATGGTAGGTTGAAGAACAAGGAAGGATGGACTGCTGTTAGGCAAGCTATCATTAACAAACAAGATAAAATAGCAATGGTTATGATCAAGTACTCTTGGAATGACCCTGACAACAAATATTTTAGAAGGTTGCCTAGGTATATAGGGACTATGAGAAGGATGAAGGACTTCTACATGGAGATTTCATTTCATTTTGAGAGTTCTGTGATACCTTTCATCTCGAGGATTGCACCTTCGGATACTTACAAGATTTGGAAAAAGGGTGGGAATATGAGGGCAGATATGACTTTGGCCGGCTTTGATGGTTTGAAAATCAAGAGGTCTAATCAGAGCGTTCTTTTCCTTGGTGATGGTACTTCAGATGATGAGAGCAAATTTCCCGGATCGCTGTTCAAAGTCTTGCACAAAGAGAAGAAAGTATATGTGGTTTCACCTAGTTTAGATGCCCCCACTGATAGAGATGTTAAGGACACATTAGCTAAGAAGTCTAGGTCTGAATCAGTGAGGAGGGTAGGGCTTGATGTGAGTCAGGCACTTCTTGTTCCCCAGTTAACATGGAGGAGAAAGGAGAGAAAAGAAATGGTGGGGCCATGGAAAGCTAAGGTGTATGACATGCAAAATGTGGTTTTTAGTGTGAAATCCAGAAGGATCCCTGGTGCTCCACCACCTGAGGCGAAGCCAGCTCCTAAGAAAACTAAGAAGAAGGACAATGGAAAAATTGAAGACATTTTGACAGATGAAGAAAGGAAGCAATTTGAAGCTGCAATGAATTCATCAGATGATAATGGCCACAGTCACAATCGTGCGAAGAAAGAAAAGAAAGGAAGGTCTGGTGGACATAGAGACCACAAGGAGAGAAAAACCAATAGTGCACAACCTGCTGAGCATTTTGTAAACCAGAAGGGTGAAAGCCAGTTTAAGAGAGGGATGATGCCTGCTCTTTGGCTTTCCCAGAACTTCCCACTAAAAATTGATGAATTGCTACCTATGCTTGACATTCTTGCTGAAAAACTTAAAGCGGTCCGTCGGTTAAGAGAACTCCTTACAACAAAACTTCCAAAGGAATCCTTTCCAGTCAAGGTTGCCATTCCCGTGGTGTCCACTGTTAGAGTATTGGTAACTTTTACAAAGTTTGAAGAAATACAACATGAAAATGCAGATGAGTTTGAATCAGCCCCATCTAGTCCTACTTCTGGTGACCAAGAGAACCCAGAAGAGGAACGTTCCTCATCATCATCATGGTTTGGGTGGATAAAGACCCCTTCTAGATCAAGTACGACATGTGCGGAATCTAGTAGTAAAATATTTGACGCCGAGGACCTGTTTGCTATTCCCTCTGGTTTTAAATGGATTACTATTGAATAA

Predicted protein sequences of Glyma20g18900

Limit To All Plant Sequences

>Glyma20g18900.2   sequence type=predicted peptide   gene model=Glyma20g18900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGINVSEYAHSSVHKAIILKDHAGLKEILGVLPKLGNPLEIKTEAASIAEDEKAAAISVVVDRRDVPHGDTPLHMAAKLGDIVATEMLMDAGANGRLKNKEGWTAVRQAIINKQDKIAMVMIKYSWNDPDNKYFRRLPRYIGTMRRMKDFYMEISFHFESSVIPFISRIAPSDTYKIWKKGGNMRADMTLAGFDGLKIKRSNQSVLFLGDGTSDDESKFPGSLFKVLHKEKKVYVVSPSLDAPTDRDVKDTLAKKSRSESVRRVGLDVSQALLVPQLTWRRKERKEMVGPWKAKVYDMQNVVFSVKSRRIPGAPPPEAKPAPKKTKKKDNGKIEDILTDEERKQFEAAMNSSDDNGHSHNRAKKEKKGRSGGHRDHKERKTNSAQPAEHFVNQKGESQFKRGMMPALWLSQNFPLKIDELLPMLDILAEKLKAVRRLRELLTTKLPKESFPVKVAIPVVSTVRVLVTFTKFEEIQHENADEFESAPSSPTSGDQENPEEERSSSSSWFGWIKTPSRSSTTCAESSSKIFDAEDLFAIPSGFKWITIE*

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