Glyma20g18870 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g18870

Feature Type:	gene_model
Chromosome:	Gm20
Start:	26485323
stop:	26495684
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g18870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24190	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr3:8743319-8747703 FORWARD LENGTH=793	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1235	KOG	Predicted unusual protein kinase	JGI		ISS
PTHR10566	Panther	CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED	JGI		ISS
PTHR10566:SF10	Panther	ABC1 - RELATED	JGI		ISS
PF01636	PFAM	Phosphotransferase enzyme family	JGI		ISS
PF03109	PFAM	ABC1 family	JGI		ISS
UniRef100_B9RWK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein ABC1, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9RWK9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00018C6B4C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C6B4C related cluster n=1 Tax=unknown RepID=UPI00018C6B4C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g18870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g18870

Paralog	Evidence	Comments
Glyma10g24540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g18870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g076300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g18870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g18870

Limit To All Plant Sequences

>Glyma20g18870.1   sequence type=CDS   gene model=Glyma20g18870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCGGCATCGCAGCTCGTCTCCTGCGGAATCGATCCCTTCCATCGCGCCTCCTCTCCTTCCCCGCGCCACCGCCGCCACAGCAACCTCCTCCTCCTACGCCGTCGCTCCAGCCGTGTCTTCGCCGTCTCCGCCGAGCCGAAACCCGCCGTCAACGGAGCAAACTCGAGGCCGCCTCCGACCAGAGCCGTCAATGGCGGCGTCTCCACGAGAATTGGAGATGTTTCGAAGGAGATTAAGAGAGTGAGGGCGCAAATGGAAGAGGATGAACAGTTAGCGACGCTCATGAGGGGTCTTCGAGGCCAGAATTTGAGGGACTCGCTCTTCGCTGAGGACGATGTTGAACTTCGTCTTGTTGAGGTAGACGAGAGTAGTGAGTTTTTGCCATTGGTGTATGATCCTGCCAGCATTTCTGCATATTGGGGAAAACGTCCACGCGCGGTTGCAACGCGCATTGTGCAGTTGCTATCAGTTGCAGGAGGTTTTCTTTCTCGCATTGCCGGGGATGTGATTAACAAGAAGGTTAAAGAGAATGAAGTTGCTAGGGCCATTGAGTTACGTGAAATTGTGACATCTTTGGGTCCAGCGTACATAAAACTCGGGCAAGCATTGAGCATTCGACCTGATATACTGTCACCCGTAGCAATGACGGAGCTGCAGAAGCTATGTGATAAAGTTCCTTCATTTGCAGATGATGTGGCTATGGCTCTAATTGAGGAGGAGCTTGGTCAGCCATGGCAAAACATCTATTCTGAACTATCATCTTCTCCCATTGCAGCTGCATCTCTTGGACAGGTATACAAGGGTCGCCTAATGGAAAATGGGGATTTGGTAGCTGTTAAAGTGCAAAGACCTTTCGTTCTTGAGACAGTTACAATTGATTTATTTATTATTAGGAACCTGGGTTTGGCTCTTCGAAAGTTTCCTCAGGTCTCCATTGATGTGGTTGGGTTGGTTGATGAGTGGGCTGCTCGATTTTTTGAGGAGTTAGACTATGTGAATGAAGGTGAAAATGGAAACCGTTTTGCAGAAATGATGAGGAAAGACCTACCACAGGTTGTCATACCAAGAACCTACCATAAATATACATCAAGGAGGGTTCTTACGACAGAATGGATTGATGGAGAGAAGCTGTCACAGAGCACAGAAAGTGATGTTGGAGAATTGGTTAATGTTGGAGTCATCTGCTATCTAAAACAGCTTCTAGATACTGGATTTTTTCATGCTGATCCACACCCGGGAAATTTGATCCGCACTCCTGATGGAAAACTTGCCATACTTGACTTTGGGCTTGTTACAAAACTGACTGATGATCAAAAGTATGGAATGATCGAAGCAATTGCTCATCTCATCCATCGGGATTATCCAGCCATAGTAAAAGACTTTGTTAAACTTGGTTTTATTCCCGATGGAGTCAATTTGGAGCCTATCTTACCAGTTCTTGCCAAGGTTTTTGATCAGGCCTTAGAAGGTGGAGGGGCAAAAAACATCAATTTTCAGGAGCTGGCATCAGATTTAGCTCAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGAGCTATTGGGGTTCTGGAAGGGATAGCTTTAGTAGGAAATTCTGAATTTGCCATTGTTGACGAGGCTTATCCTTATATTGCACAGAGGCTCCTCACAGATGAATCTCCTCGGCTAAGGGATGCTCTGCGTTACACTATATATGGGAAATCTGGGGTTTTTGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTTGAGAATTTTATTACTGCTGCCAAAAGTGGCGGTGGAGAGAACATGAATGGGAATATGGCTGAACTTGGGATTCTTTCTACTAGTCAGTCAGAATATTTGTTGCCAGGATTCCAATCTGTCATTCCTCTATCACAGCAGCCAGTGCAAACAAGGGCAGCTTTAGCGTTTTTGTTGTCTGACAGGGGGAATTTTTTCCGAGAATTTCTTTTGGACGAGATCGTCAAGGGCATCGATGCAGTAACAAGGGAACAACTGGTGAGAGTAATGTCCTTGCTAGGAGTTCAGAATGTAACCCCTGTTTTCAGCATGGTACCTACAGTGGGACCCTTTAAGCCTGCGGCTCTTATACCCACCATAACTGAAGAGGATGAAGTTATATTGAACAATGTCCAGATGGTGGTGGAGTTCTTGACTGCTGGAAGTTCCCTATCAAGAACATCTGGTCAGGCACTGAATATTCCTCAGATTATCCAAGAGCTTCTCCCAGTGTTACCAGGCATCTCTGTTAAAGTGCTTCCGGAGGTTGTTAGCAGATTATCTTCTCGGGTTTTAGCACGATTAATTCGTGATACATTTTTGTAA

Predicted protein sequences of Glyma20g18870

Limit To All Plant Sequences

>Glyma20g18870.1   sequence type=predicted peptide   gene model=Glyma20g18870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAASQLVSCGIDPFHRASSPSPRHRRHSNLLLLRRRSSRVFAVSAEPKPAVNGANSRPPPTRAVNGGVSTRIGDVSKEIKRVRAQMEEDEQLATLMRGLRGQNLRDSLFAEDDVELRLVEVDESSEFLPLVYDPASISAYWGKRPRAVATRIVQLLSVAGGFLSRIAGDVINKKVKENEVARAIELREIVTSLGPAYIKLGQALSIRPDILSPVAMTELQKLCDKVPSFADDVAMALIEEELGQPWQNIYSELSSSPIAAASLGQVYKGRLMENGDLVAVKVQRPFVLETVTIDLFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGNRFAEMMRKDLPQVVIPRTYHKYTSRRVLTTEWIDGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYPAIVKDFVKLGFIPDGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNSEFAIVDEAYPYIAQRLLTDESPRLRDALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGENMNGNMAELGILSTSQSEYLLPGFQSVIPLSQQPVQTRAALAFLLSDRGNFFREFLLDEIVKGIDAVTREQLVRVMSLLGVQNVTPVFSMVPTVGPFKPAALIPTITEEDEVILNNVQMVVEFLTAGSSLSRTSGQALNIPQIIQELLPVLPGISVKVLPEVVSRLSSRVLARLIRDTFL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain