Glyma20g18656 - SoyBase

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Report for Sequence Feature Glyma20g18656

Feature Type:	gene_model
Chromosome:	Gm20
Start:	26216087
stop:	26288431
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g18656

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04730	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:1325385-1331086 REVERSE LENGTH=943	SoyBase	E_val: 0	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005657	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: replication fork	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG1969	KOG	DNA replication checkpoint protein CHL12/CTF18	JGI		ISS
PTHR13779	Panther	HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED	JGI		ISS
PTHR13779:SF3	Panther	HELICASE - RELATED	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_B9RWK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Chromosome transmission fidelity factor, putative n=1 Tax=Ricinus communis RepID=B9RWK5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_B9RWK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromosome transmission fidelity factor, putative n=1 Tax=Ricinus communis RepID=B9RWK5_RICCO	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g18656

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g18656 not represented in the dataset	Glyma20g18656 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g18656 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma20g18656

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g18656

Limit To All Plant Sequences

>Glyma20g18656.1   sequence type=CDS   gene model=Glyma20g18656   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATATGGACATGGATATTCCCCTCCCCGAAGAACTCGAATTTCTCGAATCAAATTCTCATTTTGCCGAACAAGAACAAGAAGAAGAAGACCATCACTATTACTTCCCAGACCTAGACCCCGCCGCCGAATTTCTTGAATCAAATTCTCAACAATCGCCGTCGCCGCAAGATCTCGCGGTTCCTTCGGCGGAGCCCGAATTCAACGGCCACAAGCGATCGCGTCCGCCTTCTCCAGAAGAGAAGAGAGCGAAGGTTAGGGTTGCCGTCGAGGAGGATTTCGCCGTGGCCGACGAGGACTGGCCCCGGTACTCTCCTCCGCCGGCTCCTCCGGAGCAGGCGATGGAGGAAATGATGTTCGAGAAGGAGAAGACACTGTCGAGATTCGCCTCGGAGATTGACGGCGAGTGCATGCCGATCACCGCGCCCAGCGGCAACAGGGTTTACGCGAAGCTGAACCGGTTCCAAGGAGAGGAGCGCGTCACGAAGCTTGATTACAATGGATATTCTGCTGAGCTTAGTTCAGAACCAGTTAATGTTATACTTGAGAGGTTGGAGCAAGAGGCTTTCGCTAAGGCCTTGGAAGCTAGTTCTGAAGGCAAAAGTGTTCTAGACATTCCTGAAGCACAAACGGTTCATGAGCGACTTTGGGTTGATAAATATGCTCCAAAATCATTTACCGAGCTTCTCAGTGATGAACAGACAAATCGCGAGGTACTCTTGTGGTTGAAACAATGGGATTCTATTGTGTTTGGATCTGAAATTCGAAGCACATCAGATGATGTTTTGTCATCTTTGAAACGACATTCTTCTATTGTCCACAATCAGAAACCATTGAATTCAAAGTTTCCAAGGATGAATGGAGGACCCAAATGGAGTAATGGGAGGAGGTATATAAATGCTAGAAGTATGGATGAGAGTGGTAGTTCAAAGAGTATTCAAGATGTATGGAATGCAAAGTCAAGGAATATTGGTCCTCCAGAACAAAAGATCCTTCTGCTCTGTGGATCACCAGGTCTTGGAAAAACAACACTTGCCCATGTAGCTGCTAGGCACTGTGGATATCATGTGGTGGAGGTCAATGCTAGTGATGATCGTTCAACAGCATCAATTGAAGCCAAAATCCTTGATGTGGTCCAGATGAACTCTGTCTTGTCTGACTCAAGGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTTCCGAAAGGAAGCCTGATGCTGGGAAACAAAGTTTTGGCAAAGGACAGCAGGAAAGGAAGTCATCAAAAAAGGGTTCGAAAGCAGCTTCACTTTCAAGACCTGTGATTTGCATTTGTAATGACCTATATGCACCTGCCTTAAGACCATTACGTCAGGTAGCCAAGGTTCATATATTTGTTCAACCAACGGTTAGTCGTGTGGTAAACAGGCTGACATATATATGTAACAAGGAGGGGATGAAAGCCAGTGCAATTGCACTAACTGCTCTAGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACACTCTCCAATTTCTCTCCAAGAAGAATGAGGCCCTCAATGTGTTTGATATTGGTTCTCAAGTTGTTGGCCAGAAGGACACGTCAAAGAATGTTCTAGACGTCTGGAAAGAGATATTCCACAAGAGAAGAACAAAAAAGACGGAAAGAAAATCTCATAGAGGCAAGTCCTTTGAATTTGACTCCTTGTACTCCCTTGTTTCAAACCGTGGTGATAGTAACTTGATTCTGGATGGAATTCATGAAAATGTTTTGCAGCTCAATTATCATGACCCAGTAATGCAGAAAACTGTCAAGTGCTTCGACAATCTTGGAGTTTATGATCTAATGCATCAATATATAATGCATACACAACAGATGCCCCTGTATGTATATTTGCCCCTAGTAGCAATTACTGTACATCATATAGTATCTCAAGTTCAGAAACCAAACATTGAGTGGCCAAAATCACATCAGAGATATCGTACCATGATGATGGAAAAGATGGACATTTTGAATACCTGGCACCACAAAATCCCACCGTATATTGCAAGGAACTTATCAGCTAGTTCCTTTGTTGAAGACTTAATTTCTCCATTATTACATATTTTGTCCCCACCAACTGTAAGACCGGTAGCATTTCAATTACTATCAGATAAGGAGCAGAATGATCTTGCTCAATTAGTTAGCACAATGGTATCATACACTATAACATATAAAACTTTGAAATCAGATATTCTGCCTCAAACCCAGAGGTGTGAAGTAGCTGATGGCTTGGCACTGTCTCTTGTTCCTCCTATTAGCGACTTTATAAATTTCAAGGATTATACTTCAAACCATTATGTGCTTTCTGTAGCTATGAAGCAGGTTTTGGTTCATGAGGTTGAAAAGCATAAGATTTTACAAGTTGGTAATGACAAAGCTGGGGCCTTCACAAATGGAGGGCATGAAGTTATTGAGACTGGAACTAACAACATCCCATTAGCCAATACCAGTCATGCAACTGCAGTTGATTTGAAAATTAATGAAAATCAGGCTAATGTTTTATCATGGCAATTAAATGCTAATCCAACAACAGTTTCACCAAACTTGGATTCCAATAAAATTTCACGTGCAGCAGACTGTGGGAAACTACTAAACATGGGAAATATGAAAAAACCATCCAGAAGTTCCTCAAGTTTCTTTGATAGGTTTAAAAAAGTAAATGCTAAGGGTTTACAAAGTAATGACAGATCTCCACAGGAAGAAGCTACCTTGGAGAAAGATCGATACCCTTTACTTTTTAAATTTAACGAGGGCTTTACTAATGCAGTGAAAAGGCCTGTTCGTATTCGTGAATTTCTATCCTAA

Predicted protein sequences of Glyma20g18656

Limit To All Plant Sequences

>Glyma20g18656.1   sequence type=predicted peptide   gene model=Glyma20g18656   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDMDMDIPLPEELEFLESNSHFAEQEQEEEDHHYYFPDLDPAAEFLESNSQQSPSPQDLAVPSAEPEFNGHKRSRPPSPEEKRAKVRVAVEEDFAVADEDWPRYSPPPAPPEQAMEEMMFEKEKTLSRFASEIDGECMPITAPSGNRVYAKLNRFQGEERVTKLDYNGYSAELSSEPVNVILERLEQEAFAKALEASSEGKSVLDIPEAQTVHERLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSIVFGSEIRSTSDDVLSSLKRHSSIVHNQKPLNSKFPRMNGGPKWSNGRRYINARSMDESGSSKSIQDVWNAKSRNIGPPEQKILLLCGSPGLGKTTLAHVAARHCGYHVVEVNASDDRSTASIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISSERKPDAGKQSFGKGQQERKSSKKGSKAASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVNRLTYICNKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKNEALNVFDIGSQVVGQKDTSKNVLDVWKEIFHKRRTKKTERKSHRGKSFEFDSLYSLVSNRGDSNLILDGIHENVLQLNYHDPVMQKTVKCFDNLGVYDLMHQYIMHTQQMPLYVYLPLVAITVHHIVSQVQKPNIEWPKSHQRYRTMMMEKMDILNTWHHKIPPYIARNLSASSFVEDLISPLLHILSPPTVRPVAFQLLSDKEQNDLAQLVSTMVSYTITYKTLKSDILPQTQRCEVADGLALSLVPPISDFINFKDYTSNHYVLSVAMKQVLVHEVEKHKILQVGNDKAGAFTNGGHEVIETGTNNIPLANTSHATAVDLKINENQANVLSWQLNANPTTVSPNLDSNKISRAADCGKLLNMGNMKKPSRSSSSFFDRFKKVNAKGLQSNDRSPQEEATLEKDRYPLLFKFNEGFTNAVKRPVRIREFLS*

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