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Report for Sequence Feature Glyma20g18588

Feature Type:gene_model
Chromosome:Gm20
Start:26196170
stop:26196764
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g18588
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24660AT Annotation by Michelle Graham. TAIR10: homeobox protein 22 | chr4:12724851-12725513 REVERSE LENGTH=220 SoyBaseE_val: 1.00E-47ISS
GO:0009686GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0048608GO-bp Annotation by Michelle Graham. GO Biological Process: reproductive structure development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF04770PFAM ZF-HD protein dimerisation region JGI ISS
UniRef100_G7JXR5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger-homeodomain protein n=1 Tax=Medicago truncatula RepID=G7JXR5_MEDTR SoyBaseE_val: 1.00E-55ISS
UniRef100_UPI000233DCD2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DCD2 related cluster n=1 Tax=unknown RepID=UPI000233DCD2 SoyBaseE_val: 1.00E-107ISS

Expression Patterns of Glyma20g18588
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g18588 not represented in the dataset
Glyma20g18588 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g18588 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g075800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g18588
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g18588
>Glyma20g18588.1   sequence type=CDS   gene model=Glyma20g18588   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCAAAACAACAACAATGAGAAGTATCATGAGTGCCTCAAGAACCACACTGTCAAAATTGGCAGCCACACACTTGATGGATGCATCAAGTTCTTGCCATTGGGCAAGGAGGGAACCCTGGACGCGCTAAAATGCATTGTGTGCAACTACCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCTACCCGGAGTCTTACCACCACCACCCGCCGTTGCCGTTCACAGCATACTATAGGGCACCGGTGGGCTACCCCCATGTGCAAGGGCAGCAATGCACCACACTGGCACTCCCCTCCAGGTCAAGGGGCAGTGGTGGGGCCCATTCCTCGAGGGAGGACATGGAGGCAATGTCAGACCCAACGAGTGGTGCCACTCCTCATGAGCAAAAGGAGAAGATGTTGGCCTTCGGAGAAAAGCTTGGTTGGAGGATTCATAAGCACAATGAGAGTGTCGTGCAGGAGTTTTGTGCTCAAACTAGTGTCCAACCTCATGTGCTTAAGGTGTGGATGCACAACAACAAGCACACCTTGGGTAAGAAGTCCTAG
Predicted protein sequences of Glyma20g18588
>Glyma20g18588.1   sequence type=predicted peptide   gene model=Glyma20g18588   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQNNNNEKYHECLKNHTVKIGSHTLDGCIKFLPLGKEGTLDALKCIVCNYHRNFHRKETPNDTYPESYHHHPPLPFTAYYRAPVGYPHVQGQQCTTLALPSRSRGSGGAHSSREDMEAMSDPTSGATPHEQKEKMLAFGEKLGWRIHKHNESVVQEFCAQTSVQPHVLKVWMHNNKHTLGKKS*






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