Glyma20g18440 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g18440

Feature Type:	gene_model
Chromosome:	Gm20
Start:	25993684
stop:	26000453
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g18440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09760	AT	Annotation by Michelle Graham. TAIR10: U2 small nuclear ribonucleoprotein A \| chr1:3159476-3161603 REVERSE LENGTH=249	SoyBase	E_val: 2.00E-130	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015030	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Cajal body	SoyBase	N/A	ISS
KOG1644	KOG	U2-associated snRNP A' protein	JGI		ISS
PTHR10552	Panther	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	JGI		ISS
UniRef100_B9RG43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U2 small nuclear ribonucleoprotein A, putative n=1 Tax=Ricinus communis RepID=B9RG43_RICCO	SoyBase	E_val: 2.00E-154	ISS
UniRef100_C6T8S2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8S2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g18440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g18440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g075100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g18440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g18440

Limit To All Plant Sequences

>Glyma20g18440.4   sequence type=transcript   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGCCCCACCTCCCCCTAACCTCCCCACACCACGGCTCCATGCAAATACCACCATCAAACACCACAGACCATAGTCGACAACTCCTTGCAAGAAAGAAGACGCTGATGGAGAAAAAGACAAAGAGGTGTGAAACATGCCTCCATTTTGGAATTGCGAGGCCCATTTAAAGAGGGGCCTCAAGAGAGGCCCATCCTAGTCAGCCCTAAATAAAGCGGGTCAGGATCAGCCCACGATCGAAGCTAGCTGCTTGTGAAAGACGCACCGCGCAGCTCGCACTTGCAGCAGCATTTGAACTCTACTATCGTTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGGTAAGGCTCACTGCTGACTTGATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAAAATGTACCATATCTTAACCGGTTGGGCACAATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATCGGAGAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTTGAAATTGATCCTTTAGCATCTCTTCCAAAGCTGCACTTCCTTAGTCTGCTGGACAACAATATTACAAAGAAACCTAATTACAGGCTTTATGTTATTAACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATGTTTCTGAGGCGATTGAGGAACAACAGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAGGCATTGAAGTCTGGTCAGCTTCCTGCAGATTTAATAAGCTTGAGTGATAATATAATGTTGGATAATGTTGATGAAAAACATGAGGACATGATTCATGATGATAGAAGTCAAGCTGATGGCAAATCGAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGGATTAGAGTGAAAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGTCAGGTTCTAGAGTTAGACTCTTGGTAATTTTCCATGAGGTGTACTTTATGAATCTTCCATTACTTGAGAACTGGATGTTTCAATTTCACTCGTGGTGAATCATTGCTTTGGCCTTTATATATGTGTTAAATTGTATTATTTTTACACTAGAACGATTATGGAATTTGCCTAGAGTTTTTTCACAAATG

>Glyma20g18440.5   sequence type=transcript   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCCACCTCCCCCTAACCTCCCCACACCACGGCTCCATGCAAATACCACCATCAAACACCACAGACCATAGTCGACAACTCCTTGCAAGAAAGAAGACGCTGATGGAGAAAAAGACAAAGAGGTGTGAAACATGCCTCCATTTTGGAATTGCGAGGCCCATTTAAAGAGGGGCCTCAAGAGAGGCCCATCCTAGTCAGCCCTAAATAAAGCGGGTCAGGATCAGCCCACGATCGAAGCTAGCTGCTTGTGAAAGACGCACCGCGCAGCTCGCACTTGCAGCAGCATTTGAACTCTACTATCGTTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGGTAAGGCTCACTGCTGACTTGATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAAAATGTACCATATCTTAACCGGTTGGGCACAATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATCGGAGAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTTGAAATTGATCCTTTAGCATCTCTTCCAAAGCTGCACTTCCTTAGTCTGCTGGACAACAATATTACAAAGAAACCTAATTACAGGCTTTATGTTATTAACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATGTTTCTGAGGCGATTGAGGAACAACAGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGATTTGTGTATAAGAAGGAAAACCCAAGTCACTTGAGTACAGTCATCAATAAAAGTCACAAACCAGCAAGCCATTGACACATTTGGAATAGGAGATGTATGAACAAGGTAAAAAGGAAAGGTACTCTTTTTATTACTTGATGGAAATGGTACACGCTTGTGTTTTGCAATTTCACATACATCACATTGAAGGCATTCATTTTTTATGCCAGAAAACAGAGATGGAAACATAACTTTATTGATTTCAAAAGTGGAATGTCCTAGTCAACAATGAAAAAGTAGAATTTTGTCTTTTTTTGACAATTGAGACTCTAACATGAATGAATGAATGAAATTGGTTTTCTTCTAAAACTGGTACACAAGACTCTTCAAGAAGATAAAGGCCATTTCTTTCACTGGCATGTCCAATCGTTCTCCCTGATTCCTTGTCCTGGAATACACAACAATGGTCATAAAAAATAATAATGCAAGATATGCCATTTGTAAGCTTCTGAACAGAGACAAGATTTGTGGACAACTTTGGGACATGCAAAACAATTTTTAGGGTTATGAAGGGATTTATTTGGATGTTCCCTATACTGGCTACAGTTATAAGAGTGCCATCAGCAATTACTATTTTCTTATTGCTAGGACAGGGAGAATAGGTGGAGAGGCATGTAAATGGAGTCATATGGTCAGTGGCTCCAAAATCTAAAATCCAAGGGGATAGAAGTGTTTTTGAGACATTAAATCCAAATGAGAGGAAGCATACCTGAATATGCCAATGTACAAGCACCTGATGGTTTTTCAAGGCTGCTAAAAAAGGCTCTCATTTTTTCTATTGAGTCACCGGAAAGTTGCTGGAATCCAAACAGTCGTTGGAATTCTGACAGTTGCCAGAAAAGTCTGACAGCTTTAAGAGCGCAGTCAAACCTACTAAATAACCCTTTTTGTGTGGGAAGCATAGCCCCCCTAGATTGGGAGCTCTGATACCAAGTTAAGAAGAGAGTGAGAGAAGCAAAGCGATTTTGAATATGCCTTTCTGGGTTAATCTTCCACCCAGCAGATTGGTTTTATTTATAATCAGAATGATTATGTGGATAGCAAATAATTAATTCTAATTTCAAGAGAACAATTAAAATATCACAACTTCCTAAGTTACATTGAACCCATCTAACTATTAACTAAGCTACTTGGAAAGGAAATAATCATTAAATGCTCATTGTCTGCTTTCC

Coding sequences of Glyma20g18440

Limit To All Plant Sequences

>Glyma20g18440.3   sequence type=CDS   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGGCTCACTGCTGACTTGATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAAAATGTACCATATCTTAACCGGTTGGGCACAATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATCGGAGAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTTGAAATTGATCCTTTAGCATCTCTTCCAAAGCTGCACTTCCTTAGTCTGCTGGACAACAATATTACAAAGAAACCTAATTACAGGCTTTATGTTATTAACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATGTTTCTGAGGCGATTGAGGAACAACAGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAGGCATTGAAGTCTGGTCAGCTTCCTGCAGATTTAATAAGCTTGAGTGATAATATAATGTTGGATAATGTTGATGAAAAACATGAGGACATGATTCATGATGATAGAAGTCAAGCTGATGGCAAATCGAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGGATTAG

>Glyma20g18440.4   sequence type=CDS   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGGCTCACTGCTGACTTGATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAAAATGTACCATATCTTAACCGGTTGGGCACAATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATCGGAGAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTTGAAATTGATCCTTTAGCATCTCTTCCAAAGCTGCACTTCCTTAGTCTGCTGGACAACAATATTACAAAGAAACCTAATTACAGGCTTTATGTTATTAACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATGTTTCTGAGGCGATTGAGGAACAACAGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAGGCATTGAAGTCTGGTCAGCTTCCTGCAGATTTAATAAGCTTGAGTGATAATATAATGTTGGATAATGTTGATGAAAAACATGAGGACATGATTCATGATGATAGAAGTCAAGCTGATGGCAAATCGAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGGATTAG

>Glyma20g18440.5   sequence type=CDS   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGGCTCACTGCTGACTTGATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAAAATGTACCATATCTTAACCGGTTGGGCACAATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATCGGAGAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTTGAAATTGATCCTTTAGCATCTCTTCCAAAGCTGCACTTCCTTAGTCTGCTGGACAACAATATTACAAAGAAACCTAATTACAGGCTTTATGTTATTAACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATGTTTCTGAGGCGATTGAGGAACAACAGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGATTTGTGTATAA

Predicted protein sequences of Glyma20g18440

Limit To All Plant Sequences

>Glyma20g18440.3   sequence type=predicted peptide   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRLTADLIWKSPHFFNTIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENVPYLNRLGTMLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLHFLSLLDNNITKKPNYRLYVINNLKSLRVLDFKKVKNKERLEAKNLFASKEVIEEIQRTPAKTFSTGETPNVSEAIEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLISLSDNIMLDNVDEKHEDMIHDDRSQADGKSNDTQEQRNTDSASMEQD*

>Glyma20g18440.4   sequence type=predicted peptide   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRLTADLIWKSPHFFNTIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENVPYLNRLGTMLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLHFLSLLDNNITKKPNYRLYVINNLKSLRVLDFKKVKNKERLEAKNLFASKEVIEEIQRTPAKTFSTGETPNVSEAIEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLISLSDNIMLDNVDEKHEDMIHDDRSQADGKSNDTQEQRNTDSASMEQD*

>Glyma20g18440.5   sequence type=predicted peptide   gene model=Glyma20g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRLTADLIWKSPHFFNTIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENVPYLNRLGTMLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLHFLSLLDNNITKKPNYRLYVINNLKSLRVLDFKKVKNKERLEAKNLFASKEVIEEIQRTPAKTFSTGETPNVSEAIEEQQTPKVVAPTPEQIIAIKICV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain