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Report for Sequence Feature Glyma20g18290

Feature Type:gene_model
Chromosome:Gm20
Start:25628261
stop:25640760
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g18290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38710AT Annotation by Michelle Graham. TAIR10: AMMECR1 family | chr2:16184517-16186764 REVERSE LENGTH=214 SoyBaseE_val: 1.00E-116ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
KOG3274 KOG Uncharacterized conserved protein, AMMECR1 JGI ISS
PTHR13016Panther AMMECR1 HOMOLOG JGI ISS
PF01871PFAM AMMECR1 JGI ISS
UniRef100_B9RPU3UniRef Annotation by Michelle Graham. Most informative UniRef hit: AMME syndrome candidateprotein 1 protein, putative n=1 Tax=Ricinus communis RepID=B9RPU3_RICCO SoyBaseE_val: 8.00E-118ISS
UniRef100_I1NEF7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEF7_SOYBN SoyBaseE_val: 2.00E-156ISS

Expression Patterns of Glyma20g18290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g18290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g074500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g18290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g18290
>Glyma20g18290.1   sequence type=CDS   gene model=Glyma20g18290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCGGCGAACAAGGAGATGGTCGTGTACTGCTTCGACACCCTCCTCGCTCACTACAACAGCACGGAAGCTCCTTCCCCTGCCTTCGATCAGGCTCAACATCCATTGTTTGTTACATGGAAGAAAGTGGTGAATGGTGGAGATCCTCGTCTTCGGGGTTGCATCGGAACTCTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCACTGACCAGTGCCCTCAGGGACCGGAGATTTCCACCCATACAGGCTAATGAGCTGCCGCTTTTGGAGTGTACAGTGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAATGGTCCAATAACCGATGAACTTAGGATGCAAATACAACTAACCAGATACCAAAGCACCTTATTTACCATGCACTATAGTGAATATGTCTCCTATGTGAAGGAGAGAAGAGGTGAAGCTCCTATTCTTTCAGCTAAATCACCCAACTATTGA
Predicted protein sequences of Glyma20g18290
>Glyma20g18290.1   sequence type=predicted peptide   gene model=Glyma20g18290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSANKEMVVYCFDTLLAHYNSTEAPSPAFDQAQHPLFVTWKKVVNGGDPRLRGCIGTLEARSLINGLKDYALTSALRDRRFPPIQANELPLLECTVSLLTDYEAANHYLDWEIEKHGIIIEFSDPVYNTRRSATYLPEVAANEGWTKTEAIDSLIRKAGYNGPITDELRMQIQLTRYQSTLFTMHYSEYVSYVKERRGEAPILSAKSPNY*






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