Glyma20g18280 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g18280

Feature Type:	gene_model
Chromosome:	Gm20
Start:	25547780
stop:	25551389
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g18280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16740	AT	Annotation by Michelle Graham. TAIR10: terpene synthase 03 \| chr4:9407856-9410877 FORWARD LENGTH=565	SoyBase	E_val: 9.00E-153	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009625	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to insect	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0016106	GO-bp	Annotation by Michelle Graham. GO Biological Process: sesquiterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0080027	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to herbivore	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0010333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0034768	GO-mf	Annotation by Michelle Graham. GO Molecular Function: (E)-beta-ocimene synthase activity	SoyBase	N/A	ISS
GO:0050551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: myrcene synthase activity	SoyBase	N/A	ISS
GO:0052578	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-farnesene synthase activity	SoyBase	N/A	ISS
PF01397	PFAM	Terpene synthase, N-terminal domain	JGI		ISS
PF03936	PFAM	Terpene synthase family, metal binding domain	JGI		ISS
UniRef100_Q6EJ97	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoprene synthase, chloroplastic n=1 Tax=Pueraria montana var. lobata RepID=ISPS_PUEML	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DD1A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD1A related cluster n=1 Tax=unknown RepID=UPI000233DD1A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g18280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g18280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g074400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g18280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g18280

Limit To All Plant Sequences

>Glyma20g18280.2   sequence type=CDS   gene model=Glyma20g18280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCAACCTAATTTTATGCTTGTCTAGATATAATCAATTTTTGTCCCCCACACCAACACTAATTAGTAGTACTAGATTTCCACAAAGTAAGAACTTCCCGCAAAAAACATCTCTTGCCAATCTCAAACCTCAGCGACTTATTTGTGCAGTGAGCTCTCAGTTTACCCAAATAACAGACGATGATAGTCGACGTTCAGCTAATTACCAACCAAACCTCTGGAATTTTGAATTTCTGCCGCCGTCTCTGGAAAATGACCATAAGGTGGAAAAACTGGAAGAGAGAGCAAAAAAGGTGGAGGAGGAGGTGCGTAAGGTGATCAACGGAATAGACACAAAACCACTATTACTGGAATTGATTGATGATGTCCAGCACCTGGGATTGACGTACAAGTTTGAGAAGGACATAATCAAAGCCCTTGAGAAGATTGTTTCCTTGGATGAGAATGAGGAACACAAAAGTGAGCTTTATTATACTGCTCTTAGCTTCCGTTTACTTAGACAACATGGCTTTGAGGTCTCCCAAGATGTATTTAAGAGATTCAAGGACAAGGAAGGAGGTTTCAGTGGTGAACTTAAAGGTGATGTGCAAGGGTTGCTGAGTCTATATGAAGCATCCTACCTTGGCTTTGAGGGAGACAATCTCTTGGACGAGGCAAGGGCCTTTTCAACAACACATCTCAAGAACAATCTAAAACAAGGAATAAACACCAAAGAGGCAGAACAAGTTAATCATGCACTGGAACTTCCCTATCACAGAAGATTGCAAAGACTGGAAGCACGATGGTACCTTGAAAAATATGAACCAAAGGAACCCCACCATCAGTTACTTCTCGAACTTGCAAAGCTAGATTTCAATATGGTGCAATTATTGCACCAGAAAGAGCTGCAAGAACTGTCAAGATGGTGGAGTGAGATGGGATTAGCAAGCAAGCTGGAGTTTGCCCGAGACAGATTAATGGAGGTGTATTTCTGGGCACTCGGAATGGCACCTGATCCTCAATTCAGAGAATGTCGTAAAGCTGTCACTAAAATGTTTGGACTAGTCACCATCATCGATGATGTGTATGACATCTATGGTACCTTGGACGAGCTACAACTCTTCACCGATGCTGTTGAGAGATGGGACGTGAATGTCGTAAATACACTACCAGACTACATGAAGTTGTGCTATTTAGCACTCTATAACACGGTCAATGACACAGCTTATAGCATCCTTAAAGAAAAGGGACGTAACAACCTTTCCTATTTGAAAAAATCTTGGTGTGAGTTGTGCAAAGCATTCCTCCAAGAAGCAAAATGGTCAAACAACAAAATTGTTCCGGCATTCAGCAAGTACCTAGAAAATGCATCGGTGTCCTCTTCCGGCGTGGCTTTGCTTGCTCCTTCCTATTTTTCAGTGTGCCAAGAACAGGACATCTCATTCTCAGACAAAACTCTTCATTATTTAACTAATTTCGGTGGCCTTGTGCGCTCTTCATGCACCATTTTCAGGCTTTGCAATGACCTAACTACCTCGGCGGCTGAGCTAGAGAGGGGTGAAACAACAAATTCAATAATGTCCTACATGCATGAGAATGGCACTTCTGAGGAGCATGCATGTGAGGAGTTGAGAAATTTGATCGACATAGAGTGGAAGAAGATGAACCGACAGCGAGTTTCGGATTCTACACTCCCAAAAGCTTTCAGGGAAATAGCTATGAACATGGCTCGGGTTTCCCATAACACGTACCAATATGGAGATGGACTTGGAAGGCCAGACTACAACATAGAGAACAGAATCAAGTTTCTACTGATAGACCCTGTTCCCATTAATTAA

Predicted protein sequences of Glyma20g18280

Limit To All Plant Sequences

>Glyma20g18280.2   sequence type=predicted peptide   gene model=Glyma20g18280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNLILCLSRYNQFLSPTPTLISSTRFPQSKNFPQKTSLANLKPQRLICAVSSQFTQITDDDSRRSANYQPNLWNFEFLPPSLENDHKVEKLEERAKKVEEEVRKVINGIDTKPLLLELIDDVQHLGLTYKFEKDIIKALEKIVSLDENEEHKSELYYTALSFRLLRQHGFEVSQDVFKRFKDKEGGFSGELKGDVQGLLSLYEASYLGFEGDNLLDEARAFSTTHLKNNLKQGINTKEAEQVNHALELPYHRRLQRLEARWYLEKYEPKEPHHQLLLELAKLDFNMVQLLHQKELQELSRWWSEMGLASKLEFARDRLMEVYFWALGMAPDPQFRECRKAVTKMFGLVTIIDDVYDIYGTLDELQLFTDAVERWDVNVVNTLPDYMKLCYLALYNTVNDTAYSILKEKGRNNLSYLKKSWCELCKAFLQEAKWSNNKIVPAFSKYLENASVSSSGVALLAPSYFSVCQEQDISFSDKTLHYLTNFGGLVRSSCTIFRLCNDLTTSAAELERGETTNSIMSYMHENGTSEEHACEELRNLIDIEWKKMNRQRVSDSTLPKAFREIAMNMARVSHNTYQYGDGLGRPDYNIENRIKFLLIDPVPIN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain