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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma20g17995

Feature Type:gene_model
Chromosome:Gm20
Start:25191765
stop:25197873
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g17995
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
PTHR12215Panther PHOSPHOPANTETHEINE TRANSFERASE JGI ISS
PTHR12215:SF4Panther gb def: gh12334p [drosophila melanogaster] JGI ISS
PF01648PFAM 4'-phosphopantetheinyl transferase superfamily JGI ISS
UniRef100_B9SG80UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aminoadipate-semialdehyde dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SG80_RICCO SoyBaseE_val: 3.00E-43ISS
UniRef100_UPI000233DD18UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DD18 related cluster n=1 Tax=unknown RepID=UPI000233DD18 SoyBaseE_val: 6.00E-93ISS

Expression Patterns of Glyma20g17995
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g17995 not represented in the dataset
Glyma20g17995 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g17995 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g17995
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g17995
>Glyma20g17995.1   sequence type=CDS   gene model=Glyma20g17995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTGTGGGGTAGACATTGTCTCCTATGATGTTCCACTGGGAGAAACAATTACAGAATTCATTCAATTCTTCTCATCTTACTTTTCAAGTTTGGAATGGGATAACATAGTCAATTCAGGCACTTCGAATGATGTATTGACTGAATTTTACAGGCATTGGAGCCTTAAAGAAGCATATGTTAAACCTATAGGGAGTGGACTTACTGAAGGGCTGAATAAAGTGGAATTTTCTCACACAAGATGGACAAATATATCAGCTAAAGTGGATGGGAAGGCTATGACAGAGTGGAGATTTTGGTTGTTCGAACTTGGGGATAGACATTGTGTTTCAAGCGAGAGTTTACCCAATATCAGCTGCTACGAGTTACAAAACAACATTGAAGAAAGTGGACTTTACTGA
Predicted protein sequences of Glyma20g17995
>Glyma20g17995.1   sequence type=predicted peptide   gene model=Glyma20g17995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCGVDIVSYDVPLGETITEFIQFFSSYFSSLEWDNIVNSGTSNDVLTEFYRHWSLKEAYVKPIGSGLTEGLNKVEFSHTRWTNISAKVDGKAMTEWRFWLFELGDRHCVSSESLPNISCYELQNNIEESGLY*






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