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Report for Sequence Feature Glyma20g17960

Feature Type:gene_model
Chromosome:Gm20
Start:25068662
stop:25074266
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g17960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07050AT Annotation by Michelle Graham. TAIR10: GTP-binding family protein | chr3:2229602-2232279 REVERSE LENGTH=582 SoyBaseE_val: 0ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0010077GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of inflorescence meristem identity SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048444GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG2484 KOG GTPase JGI ISS
PTHR11089Panther GTP-BINDING PROTEIN-RELATED JGI ISS
PTHR11089:SF14Panther GTP-BINDING PROTEIN-PLANT JGI ISS
PF01926PFAM GTPase of unknown function JGI ISS
PF08701PFAM GNL3L/Grn1 putative GTPase JGI ISS
UniRef100_B9S541UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein-plant, putative n=1 Tax=Ricinus communis RepID=B9S541_RICCO SoyBaseE_val: 0ISS
UniRef100_I1NEF3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEF3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g17960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g17960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g073900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g17960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g17960
>Glyma20g17960.1   sequence type=CDS   gene model=Glyma20g17960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGAAGAGCAAGAAGAGTAAGAGCAAGAGGGTTTCGTTGAAGAAGAAGTACAAGGTCATAAGGAAGGTGAGGGAGCACAACAGGAAGAAAACGAAGGAGGCGAAGAAGCTTCGCTTGAGTGGGAAGAAGAAGGTTGAGAAGGACCCTGGTATTCCCAACGATTGGCCCTTCAAGGAGCAGGAACTCAAAGCGCTTGAAGCTCGAAGGGCGAAGGCTATTGAGGAATTGGAGCAAAAGAAAGCGGAACGCAAGGAGAGGGCTCGGAAAAGGAAATTGGGCTTGCTAGAGGATGAAGATAACTCCAAATTGAGTGACATGGATATTTTAAAAGAGAGTAATGATTTTGCTACTGTTGGGAAGACTAGAGATAGCTCAGATAGGGCCTTTTACAAAGATTTGGTTAAGGTCATTGAAGCCTCTGATGTCTTACTGGAGGTGCTTGATGCCCGGGATCCCTTGGGTACTCGTTGTGTTGATATAGAAAAGATGGTGATGAAATCGGGACCTGATAAACGTCTCGTCTTGCTTTTAAATAAAATTGATCTTGTTCCTAAAGAAGCTTTAGAGAAGTGGCTCAAGTACCTTAGAGAAGAATTACCTACTGTGGCCTTCAAGTGCAGCACACAACAACAAAGATCAAACTTAAGTGATTGTCTTGGTGCTGATACTCTCCTCAAATTGTTGAAGAATTACTCAAGAAGTCATGAGATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAGAGCAGTCTTATTAATAGCTTAAAGAGGTCCCATGTTGTCAATGTTGGTTCTACTCCTGGGTTAACAAGATCAATGCAAGAGGTTCAGTTGGACAAAAATGTTAAGTTGCTGGATTGCCCTGGTGTTGTTATGCTGAAGTCTCAAGAATATGATGCTTCCGTGGCTTTAAAAAATTGCAAGAGAATTGAGAAGTTAGACGATCCAATTAGCCCAGTGAAAGAAATTTTCAAGCTCTGCCCTCCCGAGCAGCTGGTAACTCATTACAAGATTGGAACCTTCAAATTTGGTGATGTTGATGACTTTCTACTGAAGATAGCTACAGTTAGGGGCAAGCTCAAGAAGGGTGGAATAGTTGACATTAATGCTGCTGCAAGAATCGTTCTTCATGATTGGAATGAAGGTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTGCAGAGGTTAAGATAGTTTCTGAGTTTTCAAAGGAGTTTAACATTGATGAAGTCTACAAGAGTGAATCTTCATATATTGGGAGCCTTAAATCTGTTGATGACTTAAATGCTGTTGAAGTTCCTTCAAGTCGCCCTCTCAATCTTGATGAGACAATGTTAGAGGATGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTGGCTGTGGTGGATGAATCAATGGAAGATGATGCTGGCAAGAACAAGGGGAACAGTGAAGCTGGCAGGCAAAATGAAAAATTATATGCCACAGATGGTATGCTTAATACAAAAATGAGGCGCGCTGAGAAGAAGAAAAGGAAAAAGGCCAAGAAAGCTGTAGCCTCATCGGATCCCATGGATGGTGATTATGACTTCAAAGTTGATTACTTCCAAAAGGGAGCGACAATGGATGCTGAAGAGAGCAAGAGTGAGGATGACGATGAACAAGTCAGCTCTGAGGTGCCTATGAATGAGTGA
Predicted protein sequences of Glyma20g17960
>Glyma20g17960.1   sequence type=predicted peptide   gene model=Glyma20g17960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKKSKKSKSKRVSLKKKYKVIRKVREHNRKKTKEAKKLRLSGKKKVEKDPGIPNDWPFKEQELKALEARRAKAIEELEQKKAERKERARKRKLGLLEDEDNSKLSDMDILKESNDFATVGKTRDSSDRAFYKDLVKVIEASDVLLEVLDARDPLGTRCVDIEKMVMKSGPDKRLVLLLNKIDLVPKEALEKWLKYLREELPTVAFKCSTQQQRSNLSDCLGADTLLKLLKNYSRSHEIKKSITVGLIGLPNVGKSSLINSLKRSHVVNVGSTPGLTRSMQEVQLDKNVKLLDCPGVVMLKSQEYDASVALKNCKRIEKLDDPISPVKEIFKLCPPEQLVTHYKIGTFKFGDVDDFLLKIATVRGKLKKGGIVDINAAARIVLHDWNEGKIIYYTIPPNRDQGEPAEVKIVSEFSKEFNIDEVYKSESSYIGSLKSVDDLNAVEVPSSRPLNLDETMLEDETQIKPAEQGEGPGNLAVVDESMEDDAGKNKGNSEAGRQNEKLYATDGMLNTKMRRAEKKKRKKAKKAVASSDPMDGDYDFKVDYFQKGATMDAEESKSEDDDEQVSSEVPMNE*






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