SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13630 | AT | Annotation by Michelle Graham. TAIR10: magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) | chr5:4387920-4392082 REVERSE LENGTH=1263 | SoyBase | E_val: 1.00E-65 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0010007 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: magnesium chelatase complex | SoyBase | N/A | ISS |
| GO:0016851 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium chelatase activity | SoyBase | N/A | ISS |
| PF11965 | PFAM | Domain of unknown function (DUF3479) | JGI | ISS | |
| UniRef100_I1JND2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JND2_SOYBN | SoyBase | E_val: 3.00E-80 | ISS |
| UniRef100_O65808 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Magnesium chelatase subunit n=1 Tax=Glycine max RepID=O65808_SOYBN | SoyBase | E_val: 7.00E-79 | ISS |
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Glyma20g17941 not represented in the dataset |
Glyma20g17941 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g073800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g17941.1 sequence type=CDS gene model=Glyma20g17941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATGTGCTGCCATTGGCAATGGCCTATTCACCCAAACCACCCCAGAAGTTCATAGAATTGTTCCAGAGAATGACCACAACTTGCCAATAGTTAAAATTGTGTATGAGGACCTTCAGGCTCAGTACCAATCATCCCTCACTGCTGCAGTGATAGCTTTCAATAGCAAAAGGAAGCATGCTTCCTATGTGGTTCTTGGTTACTTGGTTGAGGAGCTTCGGGACATGGTGATGTACAAGACCTTCTGCAAGGACTTGGAGGATGCCAACATCTTCATTGGGTCCTTGATTTTTGTGGAGGAGCTTGCCCTCAAGATAAAGGCTGCAATGGAGAAAGAAAGGGAAAGGCTTGATGCAGTTTTGGTGTTTCCATCAATGGATGAAGTGATGAGACTCAACAAGTTGGGTTCCTTCAGTATGTCACAGCTTCGACAGTCAAACAACCCCTTTTTCCACCTCATCATCCATTTCTATGTGAAGCAGCAGTATTCTATGTGGTCTTTCATATCTTCGTTGTATGCCCACTAA
>Glyma20g17941.1 sequence type=predicted peptide gene model=Glyma20g17941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKCAAIGNGLFTQTTPEVHRIVPENDHNLPIVKIVYEDLQAQYQSSLTAAVIAFNSKRKHASYVVLGYLVEELRDMVMYKTFCKDLEDANIFIGSLIFVEELALKIKAAMEKERERLDAVLVFPSMDEVMRLNKLGSFSMSQLRQSNNPFFHLIIHFYVKQQYSMWSFISSLYAH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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