Report for Sequence Feature Glyma20g17640
Feature Type: gene_model
Chromosome: Gm20
Start: 24709846
stop: 24710970
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g17640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06240 AT
Annotation by Michelle Graham. TAIR10: F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427
SoyBase E_val: 4.00E-31 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR10775 Panther
AC-LIKE TRANSPOSASE-RELATED
JGI ISS
PTHR10775:SF7 Panther
TRANSPOSASE-LIKE PROTEIN
JGI ISS
PF00646 PFAM
F-box domain
JGI ISS
PF07734 PFAM
F-box associated
JGI ISS
UniRef100_G7JVS7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JVS7_MEDTR
SoyBase E_val: 4.00E-58 ISS
UniRef100_I1NEF2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NEF2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g17640
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma20g17640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g073200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g17640
Coding sequences of Glyma20g17640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g17640.1 sequence type=CDS gene model=Glyma20g17640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATAAGATGAAGAGGAAGGTCACTCTACCTTTCGATTTGATCGTAGAAATTCTGTTGAGGTTGTCAGTGAGATCTTTGTTGCGTTTCAAATGCGTCTCTAAGTCATGGTGTGCTCTCATTTCGGATCCTGAATTCGCCAAATCCCATATTGACATGGCTGCCGCACCCACCCACCGATTTCTTTTCACATCATCTAATGCTTCCGAATTGAATGCAATAGACGTAGAGGCAGAGGAACCACTTTGCGACGATTCCGCGAATGTGGTCTTTAAAGTTCCACCATCATCCACTTTCAAATATTATAAACATTCGGTAAGAGTTGTAGGTTCTTGCAGAGGATTTATACTCTTGATGTTTACAGGCTTGGATTCCATTGGTTTCATCGTATGGAACCCATCAACCGGCCTGGGGAAAGAAATTCTGCATAAGCCAATGGAGAGATCATGCGAATATTTGTCTGGTTTTGGGTATGACCCATCAACTGATGACTATGTGATAGTGAATGTTATATTGTCCCGGAGGAAGCACCCGAAGATCGAATGCTTCTCTTTGAGAGCCAATTCATGGAGTTGCACTAAGAGTAAGGCTCCTTATCGTGAGAACCTTACATTTGGGGATGGGGTGTTCTTGAATGGAGCTCTTCATTGGTTGGTTAAACCCAAAGATAAAGTTGCTGTAATTATTGCATTCGATGTGACAAAAAGGACATTATTAGAGATTCCACTGCCACATGATTTAGCCATTATGCTGAAATTTAACTTATTTCGTTTCATGGTGAGACAAGGATGTCTTGTTCTCTGTTCCTTCGGTTGGAAGAATACAAGGCTTATGCCTGAAATGTGGACGATGAAGGAATACAAAGTGCAGTCATCTTGGATCAGATCACTCGTTCCGTACAAAAACTATTATAATCTCTTCGATCTTTTCTTGCCCGTATGCTTCATCCTAAACGGTGAAACTTTGGCATCTAATGCCATTAACACATTAGTGAGACTTAACGACAAAGGCGAACTGCTTGAGCATCGCATGCATGAATCGATTTTAAATAAATTTTATACTTTACTGCATTGTGTTATGTATAGAGAGAGTTTGCTATCACTGCCCAGTGCCCAGGGGATTTGA
Predicted protein sequences of Glyma20g17640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g17640.1 sequence type=predicted peptide gene model=Glyma20g17640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNKMKRKVTLPFDLIVEILLRLSVRSLLRFKCVSKSWCALISDPEFAKSHIDMAAAPTHRFLFTSSNASELNAIDVEAEEPLCDDSANVVFKVPPSSTFKYYKHSVRVVGSCRGFILLMFTGLDSIGFIVWNPSTGLGKEILHKPMERSCEYLSGFGYDPSTDDYVIVNVILSRRKHPKIECFSLRANSWSCTKSKAPYRENLTFGDGVFLNGALHWLVKPKDKVAVIIAFDVTKRTLLEIPLPHDLAIMLKFNLFRFMVRQGCLVLCSFGWKNTRLMPEMWTMKEYKVQSSWIRSLVPYKNYYNLFDLFLPVCFILNGETLASNAINTLVRLNDKGELLEHRMHESILNKFYTLLHCVMYRESLLSLPSAQGI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
