Glyma20g17560 - SoyBase

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Report for Sequence Feature Glyma20g17560

Feature Type:	gene_model
Chromosome:	Gm20
Start:	24613557
stop:	24616821
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g17560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52490	AT	Annotation by Michelle Graham. TAIR10: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein \| chr3:19455850-19458721 REVERSE LENGTH=815	SoyBase	E_val: 0	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG1051	KOG	Chaperone HSP104 and related ATP-dependent Clp proteases	JGI		ISS
PTHR11638	Panther	ATP-DEPENDENT CLP PROTEASE	JGI		ISS
PTHR11638:SF2	Panther	CLPA/CLPB/CLPC-RELATED	JGI		ISS
PF02861	PFAM	Clp amino terminal domain	JGI		ISS
UniRef100_G7I415	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Medicago truncatula RepID=G7I415_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DD15	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD15 related cluster n=1 Tax=unknown RepID=UPI000233DD15	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g17560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g17560

Paralog	Evidence	Comments
Glyma10g23840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g17560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g073000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g17560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g17560

Limit To All Plant Sequences

>Glyma20g17560.1   sequence type=CDS   gene model=Glyma20g17560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGCAGGAGTTTGCAGCATACAGCTACAGGCTCTGACACCAGAGGCTGCAACCCTAGTTAAACAAGCTGTTACTCTTGCCACAAGAAGAGGTCATGCTCAAGTGACCCCTCTTCACATTGCCACTGTCATGCTTGCTACTTCCACAGGCCTTCTCCGCAAAGTTTTCCTTCAATGCCACTCTCACCCTCTCCAATACAAGGCACTAGAACTTTGCTTCAATGTTTCCCTCAACCGTTTGCCAGCACCCACACCAAGCCCTCTTCTGAGTCCTCCATATTCCACCACTCCCTCACTTTCCAATGCCTTGGTTGCAGCCTTCAAGCGTGCTCAGGCTCACCAACGCCGCGGTTCGATTGAGAACCAGCAGCAACCCATTCTGGCCTTGAAGATTGAGATGGAGCAGCTCATAGTCTCTATCCTTGATGACCCTAGCATTAGTAGGGTCATGAGAGAAGCTGGTTTCTCTAGTGCCCTTGTTAAAACAAGGGTTGAACAAGCTGTTTCAATGGAAGTTTGTTCACAGCACCAAGCTTCCAAGGAAAACACCACCACCAAGCTTCAAGTTCTTGGTGGTAGCAGCAGCATGTCCCCATCTAGATCTTTTGGTCAATTTGGGGCATCATTCAAGTCTATAGACCATGTTGGTGATCATGTAGATGATGTAACTAGTGTTTTGAGTGAACTTGTGAGCAAGAGGAGAAACACAGTCATTGTTGGGGAGAGTCTTGCTAGTGCTGAGGGAGTAGCTAGGGGAGTGATGGAAAGGTTAGAGACAGGGAGTGTTCAAGGAGAGTTGAGGTTTGTGCAATTTGTGAGTCTTCCTCTTGTCTCCTTTAGGAACATTAGCAAGGAGGAGGTTGAAAGGAAGCTTGTGGAGCTTAGAAACCTAGTAAAAAGTCATGTGGGGAGAGGGTTAATTCTATACTTGGGTGATCTGAAATGGTTGTTTGAGTTCTGGTCTAGTTATTGTGAGCAAAGAACAAACTATTACTGTTCTGTGGAGCATATGGTGATGGAGCTTAAAAAATTGATTAGTGGAAATAGGGAGAATAGTAGGTTGTGGCTTATGGGGATAGCAACTTTTAGAACATACATTAAGGGCAAAGCATGTCACCCCTCCCTTGAAACTATTTGGGATCTTCACCCCTTTACAGTTCCAGTTGGTAGCTTGAGCCTTGCTTTAAATTTTGATAGTGATTTTCATGTTCAGGAGAGAAGCAAGGTAACATTCAAGGACGAATCTTTTGAAGAACGAGCCAAAGTGCGCAAGTATCTAACTTGCTGCAGAGATTGCTCATTGAATTTTGAAAAAGAAGCTAAAAGCATTGCTAGTAGTTTTACTATAAGCAAGAGAGATTGCACCACTAGCTTGCCAACATGGCTCAAAAATTGCAAGGCAGAGAGAAGTCGCATGATGGAGGATCAGGAAAATGCTAAGCTTTGGGATATTTGCAAGAAATGGAACTCATTTTGCAGTTCAGCACATGGATTTCCGTCCAATCTTGAGAAACCATTTTTGTTCATTTCATCCTCTCCTTCATCCCCTACTTCAGTCTCTTCACATGAAAGAAAGCCTAGTTTAAATCTGAGCCACCTAAACTGGCCAGTCATTTCTGAACGAAAAGAAGTACCTAAAGAATGTGAGTTATACACTGAGACTACTGTTAGAAATGATTCCTATGAAGGAAACTTGATAATGTTCATGCCAGAGAGGAACCATCCTAAGCCAGACCTTTTATCAAATCCAAATTCTAGCCCCAATTCCGCTTCTTCAAGTGAGGCAGTGGAAGGTTTGGACAGCACTCAAATGTTCAAGGACCATAATGATGAAAATCTGAAGATTCTATGTGATGCATTGGAGAAAAAGGCTCCACAACAGAAAAAAACAGTGAAGGAGATTGCAAGCACTGTGCTTCTTTGCAGGTCAGGAATGAGAAAAGTAGGGAATCACTTAGTGAAGAGAGATGATAGGCAAGAAACTTGGTTTTTCTTTCTAGGTGTGGATTCTCAAGCAAAAGAAATGGTCTCAAAAGAGCTAGCTAAAGTAATTTTTGGCTCTTATAGTAACTTTGTCTCCATTGGTTTAAGCTGTTTCTCTTTAACTCATGAGGAGTCCAAAAATAAAAGGGCAAGAGATGAGTTTGGTGGCAGTTATCTTCAGAGATTTGGGGAAGCACTGAATGAGAATCCTCATAGGGTGTTCTTTATGGAAGATTTGGAGCAAGTTGATCACTTTTCTAAAAAGGGTGTTAAGCAAGGAATTGAAAGTGGAGCTATAACCCTTCCTGGTGGTGAATCTGTGCCTCTCAAGGATGCAATTGTCATTTTCAGTAGTGAATGCTTCAGTTCAGTACTGTCAAGAGCTTGTTCTCCTGCAAGAACTACTTCTCCATTTTCAGATGAAGACATGAAAGAGAATATTAACAACTCAGAGGAGAAAATTTCATGCCTCTCTTTGGATCTGAACATGGCCATTGAAGTTGATGTGCAAAAAAATGTGCATTTAGATGGAGAAACTGATGAGATCCTAGAGTTAGTTGATAAGAAAATTAATTTTAAAATATGA

Predicted protein sequences of Glyma20g17560

Limit To All Plant Sequences

>Glyma20g17560.1   sequence type=predicted peptide   gene model=Glyma20g17560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRAGVCSIQLQALTPEAATLVKQAVTLATRRGHAQVTPLHIATVMLATSTGLLRKVFLQCHSHPLQYKALELCFNVSLNRLPAPTPSPLLSPPYSTTPSLSNALVAAFKRAQAHQRRGSIENQQQPILALKIEMEQLIVSILDDPSISRVMREAGFSSALVKTRVEQAVSMEVCSQHQASKENTTTKLQVLGGSSSMSPSRSFGQFGASFKSIDHVGDHVDDVTSVLSELVSKRRNTVIVGESLASAEGVARGVMERLETGSVQGELRFVQFVSLPLVSFRNISKEEVERKLVELRNLVKSHVGRGLILYLGDLKWLFEFWSSYCEQRTNYYCSVEHMVMELKKLISGNRENSRLWLMGIATFRTYIKGKACHPSLETIWDLHPFTVPVGSLSLALNFDSDFHVQERSKVTFKDESFEERAKVRKYLTCCRDCSLNFEKEAKSIASSFTISKRDCTTSLPTWLKNCKAERSRMMEDQENAKLWDICKKWNSFCSSAHGFPSNLEKPFLFISSSPSSPTSVSSHERKPSLNLSHLNWPVISERKEVPKECELYTETTVRNDSYEGNLIMFMPERNHPKPDLLSNPNSSPNSASSSEAVEGLDSTQMFKDHNDENLKILCDALEKKAPQQKKTVKEIASTVLLCRSGMRKVGNHLVKRDDRQETWFFFLGVDSQAKEMVSKELAKVIFGSYSNFVSIGLSCFSLTHEESKNKRARDEFGGSYLQRFGEALNENPHRVFFMEDLEQVDHFSKKGVKQGIESGAITLPGGESVPLKDAIVIFSSECFSSVLSRACSPARTTSPFSDEDMKENINNSEEKISCLSLDLNMAIEVDVQKNVHLDGETDEILELVDKKINFKI*

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